Query= MSMg01no163_a11.b1 MSMg01no163_a11.b1 CHROMAT_FILE:
MSMg01no163_a11.b1 PHD_FILE: MSMg01no163_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:32 2005
(656 letters)
>mm_chr16_31976107_31977162
Length = 1056
Score = 474 bits (245), Expect = e-137
Identities = 462/655 (70%), Gaps = 184/655 (28%)
Strand = Plus / Minus
Query: 4 ggaattcacttcatagctgagaaccaccttgagtttctgatctgctgcttctccagggca 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 655 ggaattcacttcatagctgagaaccaccttgagtttctgatctgctgcttctccggggca 596
Query: 64 ctgcttgcattaccagaatgggcaaacatgcctcattaat--agtgctagaaggatccaa 121
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 595 ctgcttgcattaccagaatgggcaaacatgcctcattaatagagtgctagagggatccaa 536
Query: 122 tcca-ggccttgtggattgacacaaacattttaccaaatgagccatatccccagacctag 180
|||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct: 535 tccagggccttgtggattgacgcaaacactttacaaaatgagccatatccccagacctag 476
Query: 181 aaataattttttatctacaaatctgagaagagagatacagtttagtgacttaactagcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaataattttttatctacaaatctgagaagagagatacagtttagtgacttaactagcta 416
Query: 241 taacttgagcaaatttcctaattct----------------------------------- 265
|||||||||||||||||||||||||
Sbjct: 415 taacttgagcaaatttcctaattctgaaagtcagtcctgccgtgggtggtggcgaaagcc 356
Query: 265 ------------------------------------------------------------ 265
Sbjct: 355 tttaatcccagcacttgggaggtagaggcaggcggatttctgagtttgaggccagcctgg 296
Query: 265 ------------------------------------------------------------ 265
Sbjct: 295 tctacaaagtgagttccaggacagccagggctacacagagaaaccctgtcacgaaaaaaa 236
Query: 266 --------------------------gaaagtcagtccttctctgtacaagagcacctgt 299
||||||||||||||||||||||||||||||||||
Sbjct: 235 ccaaaaaaaaaaaaaaaagaaagaaagaaagtcagtccttctctgtacaagagcacctgt 176
Query: 300 cgcctttactttgttgggagaaaaattagattatatttagcaaaccactaaatacatttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cgcctttactttgttgggagaaaaattagattatatttagcaaaccactaaatacatttt 116
Query: 360 aactacatagcaaaatgctaattgtcatgactaacattgagactcaccaagtgtgcattt 419
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 115 aactacacagtaaaatgctaattgtcatgactaacattgagactcaacaagtgtgcattt 56
Query: 420 cagtttgtttgatgatccaatcactaggtctttttttttttttaaggaaatctgg 474
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 caatttgtttgatgatccaatcactaggtctttttttttttttaaggaaatctgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_a11.g1 MSMg01no163_a11.g1 CHROMAT_FILE:
MSMg01no163_a11.g1 PHD_FILE: MSMg01no163_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:32 2005
(624 letters)
>mm_chr16_31947765_31948786
Length = 1022
Score = 1164 bits (602), Expect = 0.0
Identities = 618/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 agcttcagtcctgcttgcagaaggcaggcttgctttctgattgttcatgactctcagtcg 60
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agcttcagtcctgcttgcagacggcaggcttgctttctgattgtccatgactctcagtcg 260
Query: 61 tgctatgttatggtctagattctctatcactggtgggcctcgaggtctttatgtctgcag 120
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgct--gttatggtctagattctctatcactggtgggcctcgaggtctttacgtctgcag 318
Query: 121 gactaccgggcacatgtccatttgactttaggcatctgtaggacaatccgagttaggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gactaccgggcacatgtccatttgactttaggcatctgtaggacaatccgagttaggatt 378
Query: 181 cgaagcagcgtagcgtcctggagatgactcgtgactgctgaggtcggtgtagatcactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cgaagcagcgtagcgtcctggagatgactcgtgactgctgaggtcggtgtagatcactga 438
Query: 241 agggacgggtacgtgacctcggcccgggagggtccagtccgtgtttacgctttggcgccc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 439 agggacgggtacgtgacctcggcccgggagggtccagtccgtgcttacgctttggcgccc 498
Query: 301 ggacccttctgctgccctggacggtcccggacgccacggcggagttcctcggtgaaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggacccttctgctgccctggacggtcccggacgccacggcggagttcctcggtgaaagtg 558
Query: 361 tccttgaacctcacgacgcggcgacgcagggcaccgggcggctgatccgcgagggcgcgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tccttgaacctcacgacgcggcgacgcagggcaccgggcggctgatccgcgagggcgcgc 618
Query: 421 aggcggcgggctgcatcgtggccgcgcagctgtagctgtagcagcgcgaaggctgtgagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggcggcgggctgcatcgtggccgcgcagctgtagctgtagcagcgcgaaggctgtgagc 678
Query: 481 tgcgccgcccgccggatgggccgcgactcggacagccgctccaccagctgcgggttgtgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgcgccgcccgccggatgggccgcgactcggacagccgctccaccagctgcgggttgtgc 738
Query: 541 agcagggccgccagcagccgccggaagaccatggctctccccgcgccacggaacccgacg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcagggccgccagcagccgccggaagaccatggctctccccgcgccacggaacccgacg 798
Query: 601 ctcgctgccttcgccttccggacg 624
||||||||||||||||||||||||
Sbjct: 799 ctcgctgccttcgccttccggacg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
