BAC Information

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BAC

Clone NameMSMg01-163E22
Chromosome16 (Build37)
Map Location 33,504,692 - 33,504,966
singlet/doubletsinglet
Overlap genenone
Upstream geneZdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
Downstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E22.T7 (MSMg01no163_e22.b1)MSMg01-163E22.TJ (MSMg01no163_e22.g1)
ACCAG362162AG362163
length706710
length of high quality
(start - end)
310 (48 - 357)277 (86 - 362)
definitionCHROMAT_FILE: MSMg01no163_e22.b1 PHD_FILE: MSMg01no163_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:53 2005CHROMAT_FILE: MSMg01no163_e22.g1 PHD_FILE: MSMg01no163_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCAATATCCTGGGGTCTCCACTGCAACTGAGGCTGTCTCTTTG
CCACTGCCTCTCCTGGTCTCTCAGAACACCAAGACTCACTGGCTCTCTGT
GATCCTTTTATGCTTTCAAATCCAGGATGTGGGGGACTCACTCACTGCCA
AGTTCAGCTCCCAGCCTGAGAGGCATACTTGCCATCCCCTGGACCACACC
TTCCATGTGCTGACTTTGAACAAATTACTTTCCATCAATTGGTCTGGCTT
CCTACCAACTAGTGGATATTTTTTCAGCTCCAGTTAACCAGCATCTGGTG
TCCCTGGGAATGTTTTACCCCCCCCCACGCCTGTAATGGAGAACGTAACA
CAACTCACTCCCAAACACCCTTTGCTTCCCACTGAAAGATCACAAGCCAG
GCCTCCGTGGTTTGCATCTCTCCCATCATTCCTGTCTCTAACAACTCGTT
AAGCTCTGAGCACACAACACTTCTAGTCCCAAGTTCCAAATGCCTCCATA
ATCCTTCCCCAAACAGCATGGTGAGTGAGCTCTACCACAGTGATACCCCA
ATTTCCTGGTGTCAGTGTCTTCCCTGGTTTGTTTTCTGTTGCTTCCATAA
ACACTGGCCAAAAGCAAGGTGAGGGATGAAAAGGTTTATTTGACTTAGAG
CTTATA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGCAGCACAGT
ACCAACACATCCTTACACTCAGGGTCTGCCTTAACCATACCAAGTACAAC
ACTGTGACATGTAATCTGTTGCTGATACCACAATGCTTTCAGATTAAGAT
GCTAGCAGCCAAGCTGGCTCAATGGCTAAATAGCCCTGGCTGCTCTTCCA
GAGGATCCGGGTTTGATTCCTGCCACACAAGCCCCTGTACTGGCAGCTGC
AGAGGATTGGGTGCCCTCTTCGGTGCTTGCTCAGCTCTCACTCACATGGT
ACACAGACACTTATGTTTGCCCCACACCCACCTCAGTCTTCCTTTAAAAA
AAAAGATACTGGCAGCTCCACCCATCTACTGTTTGCACTTAGCATAGTGT
CTGGTAAGTAGGTGATGAGTGCTGAATGTAGGGTGAAGGTTCTGAGCCCA
GCCAATGAAGATCCAAGTCATCAGGAAACACCAAGTCCTATCCCAGGGAA
CGCTCTCCCTAGGCTCCCTTCCCCACAAGGGAACAGCTGTTTCAGCTTTA
AGGACATGAGAAGTTACAAACAGTAAGGTTACAACTTTAAAAGCTCATCT
GTGTGAGTAAACAGGCAAAGGTCCAAAGGTTCAAATTTTACAAGTTTTAA
CCCGCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e22.g1 MSMg01no163_e22.g1 CHROMAT_FILE:
MSMg01no163_e22.g1 PHD_FILE: MSMg01no163_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:53 2005
         (277 letters)



>mm_chr16_33504641_33505317
          Length = 677

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgcagcacagtaccaacacatccttacactcagggtctgccttaaccataccaagt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 agtgtgcagcacagtaccaacacatccttacactcagggtttgccttaaccataccaagt 267

                                                                       
Query: 61  acaacactgtgacatgtaatctgttgctgataccacaatgctttcagattaagatgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acaacactgtgacatgtaatctgttgctgataccacaatgctttcagattaagatgctag 207

                                                                       
Query: 121 cagccaagctggctcaatggctaaatagccctggctgctcttccagaggatccgggtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cagccaagctggctcaatggctaaatagccctggctgctcttccagaggatccgggtttg 147

                                                                       
Query: 181 attcctgccacacaagcccctgtactggcagctgcagaggattgggtgccctcttcggtg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 146 attcctgccacacaagcccctgtactggcagctgcagaggattgggtgccctcttcagtg 87

                                              
Query: 241 cttgctcagctctcactcacatggtacacagacac 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 86  cttgctcagctctcactcacatggtacacagacac 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)