BAC Information

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BAC

Clone NameMSMg01-163G11
Chromosome16 (Build37)
Map Location 92,682,213 - 92,682,489
singlet/doubletsinglet
Overlap geneRunx1
Upstream geneDonson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163G11.T7 (MSMg01no163_g11.b1)MSMg01-163G11.TJ (MSMg01no163_g11.g1)
ACCAG362223AG362224
length771723
length of high quality
(start - end)
126 (46 - 171)277 (78 - 354)
definitionCHROMAT_FILE: MSMg01no163_g11.b1 PHD_FILE: MSMg01no163_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:00 2005CHROMAT_FILE: MSMg01no163_g11.g1 PHD_FILE: MSMg01no163_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAGACTGCACCATAGAATCCATACTGATTCAACCTCAACTCTC
TCCAGCTTCATACCAGTGGGGCTCTTCAACTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGCNCNCNCCCCCCCCCTCCCTCACCCAAACC
AAAACAACAACAACAAACAAAAAATCTAATACAAAAATCTTAAATAAAAA
TACAAACCTAAATAAAATTACTACCCTTTTCCCACTACACCACCCCAATA
TACTACCTAACCCCCAACTTATTCTACCACCCAAAACCCATTTAAAAAAA
AAAAAAATTTTTTTTTCCCCCCCCCCCCCCCCCCAAAAATAAAAAAATAA
ATTAAATTATAATTTACCCCCCCCCAAAAAAAAAAAAATATCACCCTAAA
TACAAACTAAAACTATAAACCAAAACCGAAAAAAAAAATATTTTTATCAT
AAAAAATTCAAATTCCCCAATAACCCAATACACACCCAAAACAAAAAATA
ACAAAAAAATATACAAAAATCACAAACATCAACCCCACCACACATCACCA
AAAACACACCAAACAACATACAAAAAATATAACAAACACAAAAAAAAAAA
AATATTAACCAACCACCCCTCCCAACATAATCAAACACCCAAAAAATTTT
AATTTCAAAACAAAAAAATCCACCAAACACAAATAAAAACCACCACACCA
AAAATAAACACTACAAATTAC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATACAACTCCTTCCTTTGCATA
AAGTGACTGGATTAGAGGCACACAGTTCTCTAGAGGACACTGGCCAGCCC
TCCCATTCTCTGGACCTGAGCCTCCTGGGATCAGGTGTTGGGGAGGTGGT
ACCTTTGGGTCCATGTGTTCATGAAGAGGGTCTTAAGTTTCTAAAAGCAT
GGAGTACTATGAGTCAGATAATTTGCCTCCAATTCACTTCCATCTTCTCT
GAGAGGCGTGGAGTTTGCGTGGCTCCTGAGTGTTTCCTCCTTGGCTTAGG
AAGCCTGATTTTAACGTGCTGGCCCTCCAGCACTGCAGCCTGAGCCTGTC
ACAGGAGACCACTGCCATTTCTGTACACTCGTGGGGACCCATGTAGCCTG
GCTCGCTGGCTGGAGAGTGTCTGGGCATAGCAAATAGAGTTCCCAAACTG
GATAGACTGTCCAATATAGGCTAATAGAGGCTGGGCTGTAAGCTGGAACC
CCAACGCAGTACAGAGTAAAACTGGATGGTACTGTTAGCTCCACCCTCCA
CACAGCCCCAAACATGTGTGGATGTGAGATTCGTTGCAGAGCCAGGCACG
GAGGACATAGAGGGGTTGCCTGAAACGCACTAGTGCATGTTTACCAACAC
AGGCATGAAGTGATCAGCTAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_g11.g1 MSMg01no163_g11.g1 CHROMAT_FILE:
MSMg01no163_g11.g1 PHD_FILE: MSMg01no163_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:00 2005
         (277 letters)



>mm_chr16_92682013_92682689
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaactccttcctttgcataaagtgactggattagaggcacacagttctctagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaactccttcctttgcataaagtgactggattagaggcacacagttctctagagga 260

                                                                       
Query: 61  cactggccagccctcccattctctggacctgagcctcctgggatcaggtgttggggaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactggccagccctcccattctctggacctgagcctcctgggatcaggtgttggggaggt 320

                                                                       
Query: 121 ggtacctttgggtccatgtgttcatgaagagggtcttaagtttctaaaagcatggagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtacctttgggtccatgtgttcatgaagagggtcttaagtttctaaaagcatggagtac 380

                                                                       
Query: 181 tatgagtcagataatttgcctccaattcacttccatcttctctgagaggcgtggagtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgagtcagataatttgcctccaattcacttccatcttctctgagaggcgtggagtttg 440

                                                
Query: 241 cgtggctcctgagtgtttcctccttggcttaggaagc 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtggctcctgagtgtttcctccttggcttaggaagc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)