BAC Information

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BAC

Clone NameMSMg01-164F08
Chromosome16 (Build37)
Map Location 79,486,664 - 79,487,005
singlet/doubletsinglet
Overlap genenone
Upstream geneD16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164F08.T7 (MSMg01no164_f08.b1)MSMg01-164F08.TJ (MSMg01no164_f08.g1)
ACCAG362844AG362845
length832722
length of high quality
(start - end)
246 (50 - 295)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no164_f08.b1 PHD_FILE: MSMg01no164_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:09 2005CHROMAT_FILE: MSMg01no164_f08.g1 PHD_FILE: MSMg01no164_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGAGTAAAATGGATGGAACTAGAAAATATCATCCTGACTA
AGGTAGTCCATACCCAAAAGGACAGGCATTATATGTACTTACTGATAAGT
AGATATTTGCCATAAAGTAGAATAACCAGGATACAATTCACAGACCCAAA
GAAGTTAGATATGAAGGAAGCCCCTAGGAAGGATGCTTGAATCACATTTA
GATGAGGAAACAAATAGTCTTAGGAGGTAGAGGGAGGGAGGGAGGTGAGT
CCCTTCTTCCCCCTCTCCCTTTTTTTTTTTTTTTTCCCCCCCTCCCCCCT
TTTTCCTTCCTTTCTTTTTTTTTTTCCCCCCCCCCCCCCCCCCNNNTNNN
NNNNTNNNNNTTTTTTTTTTTTGTTTTGCCCCCCCCCAAAAAAAAAAAAA
AACCCGGTGGGTGGGGGGCCGTTTTTTTCTCCCCCTCCCCTTTTTTATTT
TTTTTCCCCCCTCCTTTCCATTCCCCTCCCCTTCCCCTTTTTTTTTTTTC
CCCACCCTTTCCCCTCTCCTTTTTCCTTTTTCTTTTTTCCTTTTTTTCTC
CCGTTTTTTTTTTTTCCCTTTTTCCCTCCGTTTTTTTTTACCCTTACCTC
TTACTCTTTTCCCCCCGTTACTTGCCCCTTTCCTCACTTATCCCTTATTT
TCTTCTTCGCTCTTCCTCCCTATTATCCCTTCCTTTTTTTTCTTNTCCCC
GTCCCCTTTATCTCTCATTCTTTCTCTTCCTTCCCTTTTCTCCATTCTCC
CTTTTTCCGTTTTCCCTGCCTCTCTCCCTCTG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTAAAATTGTTTGTATCAGA
TACATAAGATTTAAATCTCTCAAAATTTGGGGGCATAGTTATGCCATCTG
GAGATTCCCAACAACTTTATAAAAAGATTTCTTTTTCTGAAAAGTCTAGA
TTTAACTCGAATATACACAGAGAATATGCACAGAGAATATATACAGAGAA
TAAGGTCTCCAGACAACTGAAATTTTAGGCATGTATTTATTTATGAACTC
TTTCTTGTCCATAATTGATGGTCTACTATGTTTAAGAAGTAATTCTATGC
AACTAGGAAGGAAGCAGCAAAGAGTCACAAGATATCTACAAAGAAATGAC
AGTCTAGTCTAAAACCAGAACCCCCAAGAATAATGGTAATAATAAGAATA
GAGATAAAAGCTGTGAAAATTATGTAGAAGGATTTTCACTGTGAACACTC
ATCAGGGGACACAACCTGAGACAGAGCAATATCTTAGGCAAGGTGATATT
TGAACAGAGGACTGAATGATAGGTTAGAGATAATTGGCAAAGACTGAGAG
GATAAAACATTCTGTACCCAGCAAACAAACTGTGAAAAAGCAAACAGAGA
ACATAGAGAGAAATGAGTTCCATTGATCCAAAAATCTCCGGGATTTATGT
TATTTAAAAACAATAAACATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_f08.g1 MSMg01no164_f08.g1 CHROMAT_FILE:
MSMg01no164_f08.g1 PHD_FILE: MSMg01no164_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:09 2005
         (342 letters)



>mm_chr16_79486464_79487205
          Length = 742

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtaaaattgtttgtatcagatacataagatttaaatctctcaaaatttgggggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgtaaaattgtttgtatcagatacataagatttaaatctctcaaaatttgggggcat 260

                                                                       
Query: 61  agttatgccatctggagattcccaacaactttataaaaagatttctttttctgaaaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttatgccatctggagattcccaacaactttataaaaagatttctttttctgaaaagtc 320

                                                                       
Query: 121 tagatttaactcgaatatacacagagaatatgcacagagaatatatacagagaataaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatttaactcgaatatacacagagaatatgcacagagaatatatacagagaataaggt 380

                                                                       
Query: 181 ctccagacaactgaaattttaggcatgtatttatttatgaactctttcttgtccataatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccagacaactgaaattttaggcatgtatttatttatgaactctttcttgtccataatt 440

                                                                       
Query: 241 gatggtctactatgtttaagaagtaattctatgcaactaggaaggaagcagcaaagagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggtctactatgtttaagaagtaattctatgcaactaggaaggaagcagcaaagagtc 500

                                                     
Query: 301 acaagatatctacaaagaaatgacagtctagtctaaaaccag 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagatatctacaaagaaatgacagtctagtctaaaaccag 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)