BAC Information

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BAC

Clone NameMSMg01-165H09
Chromosome16 (Build37)
Map Location 56,484,337 - 56,484,973
singlet/doubletsinglet
Overlap geneAbi3bp
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
Downstream geneTfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165H09.T7 (MSMg01no165_h09.b1)MSMg01-165H09.TJ (MSMg01no165_h09.g1)
ACCAG363616AG363617
length708709
length of high quality
(start - end)
659 (42 - 700)637 (73 - 709)
definitionCHROMAT_FILE: MSMg01no165_h09.b1 PHD_FILE: MSMg01no165_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:37 2005CHROMAT_FILE: MSMg01no165_h09.g1 PHD_FILE: MSMg01no165_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTACGCTCTGAGCCCCATTTTTAAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGCCCCCTAT
CTGATTTAGGGTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTTACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTCGATCTTACAGCATAAGCCATTGCTGTTCTAC
CAGAGGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTG
TTATTCCAGATGAATTTGCAGATTGCCCTTTCTAATTCATTGAAGAATTG
AGTTAGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCA
AGATAGCCATTTTTCCTATATTGATTCTGCCAATCCATGAGCATGGGAGA
TCTTTCCATCTTCTGAGATCTTTTTAAATTTCTTTCTTCAGAGACTTGAA
GTTCTTATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAGGT
ATTTTATATTATTTGTGACTATAAGATACAATTTGTTAAACACATGAAAC
TCAAGAAGAAAGAAGACCANAGTGTGGACACTTTGCCCCTTCTTAGAATT
GGGAACAA
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAGGACAAACAGTAGCAGACTTCATT
GTTCATGGGCTGAGAGGAGCTCAGATCCTAGTGTAGCGCTGAGCATCTCA
AAGCGCCATGCTAGTGACTAGGAATACAGGTCAAGGATTTATTAGATGGG
AAAACATGGAGAACACTAAGGATGTTTTACAATGGAAGGATTTAGTGGAA
ATCAGTCTTTCTGATCACAGGACGCTTAGGTCTGGGACAGTGGGGTCACC
CTTACCTGCCATATGCCTTCTATAAACCACCCCAGCACAAGAAACACAAA
GGGTGGGAAAAGCCACATGGTGTGTTCACATTAAACTGTCCATAGACATC
CTAATATCAAACATCATACTTTGTGATATCAAATAATCCAGTGTCATGCT
AAGAATATTTTCTTTGTGCCATCGAAATTTTGCCTTGTGTGCTGAGAGCA
CATATAATTGTTTTATTAACACTAAAAGATGTCTGAACGAAGGTCCTTTA
GTTTTTCCAACTTCTCTCCACAACATCCAGTAACGATGTCTATATCCTTC
CGCAAGACACAAAGTTAGCTTGACCTCATGGTAACCATTCATGCTTACTC
TTAAAGCTACCACACAAACTTCTCAGAAGCCTGTTATTCTGAGGACTGTA
GGGTAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_h09.g1 MSMg01no165_h09.g1 CHROMAT_FILE:
MSMg01no165_h09.g1 PHD_FILE: MSMg01no165_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:38 2005
         (637 letters)



>mm_chr16_56484137_56485173
          Length = 1037

 Score = 1123 bits (581), Expect = 0.0
 Identities = 623/637 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaggacaaacagtagcagacttcattgttcatgggctgagaggagctcagatcctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 837 cacaggacaaacagtagcagacttcattgttcatgggctgagaggagctcagaccctagt 778

                                                                       
Query: 61  gtagcgctgagcatctcaaagcgccatgctagtgactaggaatacaggtcaaggatttat 120
           |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 777 gtagcgctaagcatctcaaagtgccatgccagtgactaggaatacaggtcaaggatttat 718

                                                                       
Query: 121 tagatgggaaaacatggagaacactaaggatgttttacaatggaaggatttagtggaaat 180
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 717 tagatgggaaaacatggagaacactaaggttgttttacaatggaagggtttagtggaaat 658

                                                                       
Query: 181 cagtctttctgatcacaggacgcttaggtctgggacagtggggtcacccttacctgccat 240
           |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 657 cagtctttctgaccacaggacgcttaggtctgggacaatggggccacccttacctgccat 598

                                                                       
Query: 241 atgccttctataaaccaccccagcacaagaaacacaaagggtgggaaaagccacatggtg 300
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 597 atgccttctctaaaccaccccagcacaagagacacaaagggtgggaaaagccacatggtg 538

                                                                       
Query: 301 tgttcacattaaactgtccatagacatcctaatatcaaacatcatactttgtgatatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgttcacattaaactgtccatagacatcctaatatcaaacatcatactttgtgatatcaa 478

                                                                       
Query: 361 ataatccagtgtcatgctaagaatattttctttgtgccatcgaaattttgccttgtgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ataatccagtgtcatgctaagaatattttctttgtgccatcgaaattttgccttgtgtgc 418

                                                                       
Query: 421 tgagagcacatataattgttttattaacactaaaagatgtctgaacgaaggtcctttagt 480
           ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 417 tgagagcacatataattgttttattaacagtaaaaggtgtctgaacgaaggtcctttagt 358

                                                                       
Query: 481 ttttccaacttctctccacaacatccagtaacgatgtctatatccttccgcaagacacaa 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 ttttccaacttctctccacaacatccagtaatgatgtctatatccttccgcaagacacaa 298

                                                                       
Query: 541 agttagcttgacctcatggtaaccattcatgcttactcttaaagctaccacacaaacttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agttagcttgacctcatggtaaccattcatgcttactcttaaagctaccacacaaacttc 238

                                                
Query: 601 tcagaagcctgttattctgaggactgtagggtaagtt 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tcagaagcctgttattctgaggactgtagggtaagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)