BAC Information

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BAC

Clone NameMSMg01-166J17
Chromosome16 (Build37)
Map Location 77,380,556 - 77,380,804
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039316, 1700063K16Rik, LOC665120, Usp25
Downstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166J17.T7 (MSMg01no166_j17.b1)MSMg01-166J17.TJ (MSMg01no166_j17.g1)
ACCAG364383AG364384
length738742
length of high quality
(start - end)
---249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no166_j17.b1 PHD_FILE: MSMg01no166_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:09 2005CHROMAT_FILE: MSMg01no166_j17.g1 PHD_FILE: MSMg01no166_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGTATATTGAATCGAATTTTTT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGTCTCATAGATGAGGCTAGCACT
GGGTGTTGGTCCTTGACAGTAGTGGGATTCTTAAGTAGGTGGACTTACCT
GGTGTGTAACTGTGACATTAAGAGGCCACCCTCTTCTTTAAAATGGACTG
TTAAGGGTTATATAAGACATGCATATGGCGAGTTTAAGAGAAATTTACTT
CATTTATTTCTTTCTATTCCCAGTTCAATTTTGGTACTGGATAAGCAAAA
GCATTAATTATTCATGTTTTCCCTTTATTAACCAAAAATCCTGTTTCAAT
CACAGATGATAGTACATTGCCTATGACAATCATGCATAAAAATACTGTTA
TTTCCCTGTTGTAATTGCCATTTCGCACAATTCCTGCCTCCATTTGCTAA
CCTAGGCATAGTCCTGGAAGCTTCTAGTCTCTGTACTATCTAATTGAGGC
CTAAAAATCTTTTCAACCTCTGATACTTGCTGGTGAATAAACTCACCCTT
TCCTCTCTTGTTCTTTCAGACATCTATCTGGCTGTTCCCTCTGTTCTTGT
TCTTACCCCTCTTCTATATAGTATATTTACTTTGCCTTTTCTTTTGTGTC
TCTGCTCTACCAATTCTCGATTTATAATTACATACAATCTATCTTTTTTT
ACCCCATCTTTTTATTTTTTTTTTCTCTTCCTTATCCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_j17.g1 MSMg01no166_j17.g1 CHROMAT_FILE:
MSMg01no166_j17.g1 PHD_FILE: MSMg01no166_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:09 2005
         (249 letters)



>mm_chr16_77380356_77381004
          Length = 649

 Score =  435 bits (225), Expect = e-126
 Identities = 243/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtctcatagatgaggctagcactgggtgttggtccttgacagtagtgggattcttaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ctggtctcatagatgaggctagcactgggtgttggtccttgatagtagtgggattcttaa 260

                                                                       
Query: 61  gtaggtggacttacctggtgtgtaactgtgacattaagaggccaccctcttctttaaaat 120
           ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||
Sbjct: 261 gtaggtggacttacctggtgtgtaaccatgacattaaggggccaccctcttctttaaaat 320

                                                                       
Query: 121 ggactgttaagggttatataagacatgcatatggcgagtttaagagaaatttacttcatt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggactgttaagggttatataagacatgcatatggtgagtttaagagaaatttacttcatt 380

                                                                       
Query: 181 tatttctttctattcccagttcaattttggtactggataagcaaaagcattaattattca 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tatttctttctattcccagttcaattttggtactggataatcaaaagcattaattattca 440

                    
Query: 241 tgttttccc 249
           |||||||||
Sbjct: 441 tgttttccc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)