BAC Information

Click to search

BAC

Clone NameMSMg01-166L08
Chromosome16 (Build37)
Map Location 37,031,427 - 37,031,784
singlet/doubletsinglet
Overlap genePolq
Upstream geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252
Downstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166L08.T7 (MSMg01no166_l08.b1)MSMg01-166L08.TJ (MSMg01no166_l08.g1)
ACCAG364449AG364450
length786746
length of high quality
(start - end)		360 (46 - 405)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no166_l08.b1 PHD_FILE: MSMg01no166_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:17 2005CHROMAT_FILE: MSMg01no166_l08.g1 PHD_FILE: MSMg01no166_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTATTATATCACCTCTAAATATTGCTTCCTTTTTCCACCCTACT
TTATTTATTTTTTTCTTAAGATCACACCTAGAATATTGAAATTGAAAGAA
TCTATGATTAAAAGTTTAGTTTTATGAAATTTAGTTTGTATATTTAGTAC
TCAGTTTTCTTCTGTACCCCACTTTTCTCACGGTTACCTGCTCTTTGTGA
CTTAGAAATGAGTTACTGTGAAATAAATGATTTTTTCATATAAATGAGCT
ATTATCACTGAGACTTTTCTAAATCCTGAGGCCATTGTCTTTGCAGTGAA
GCTGTAAAACTGCAGACGTTGTAGGATATTTAGGTTTCTATTACTTCTTT
TACCCCCGATTGCCCCCACCCTCTTAGGAAGTTAGCATTTTTTTCCTGTA
CCAATTCACCTTCGCTTTTGTTTTCTCCGCCTGTTTTTCCTTTTTTTCTT
TTTTTGCCCCCCCCGTTTTTCTTGCTGACTGTCTATACCATCTTATACGC
CTTCTTTTTATTTTCCCCCCTTTTTTTTTCGTCACTCTTTATCCTTTTCC
CTTTTCCCTTTTCCCCTTTTTTACTCTCCTTTTTCCCCCTATTTCCCCCT
CTCTCTCCCTTTTTTTATCCCCCCCCATTTCCACCTTTTTATTTTCCCTC
CTTTCTCTCTTTCCCTCCTTCCTTCCCTTTTCCCCCTTTATATCCCCCCC
CCCCTTTTTTTAATATACCCTCCTATTTATCACCCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGATCTATACTCCATTT
TTATTTCAGTTATTTGTTTTCTTGATGTCCAGCTTTTAAAGATTTTTATA
CATGTTAGATATTAGCCTTCTATTAGATATATAGTTGGTAAAAAAAATCT
CTTCCCATTCTGTCGTTGACCACTCTGCCCTAGTGATTGGTGTCCTTTGC
AGTAACAAGTTTTTCAGTTTCATGAGGTCTCATTTATTAATTTTTCTTAG
ACCCTGTGCTATTGATGTTCTCTTCAGAAAAATTTTTCCTGTCTCAATGA
ATTCAAGACTGTCCCCTACTTTCTTTTCTATCAGGTTCAGGTTCACTGTA
TCTGACCCAATGTTGACCCCCCCGCAGTTGAATTTTGTTCATGGTAATAT
ATATGTATCTATTTGTAGCCTTCTACTTATAGACATCTAATTTTAACTGG
ACCACTTGTTGAAAATTTTGACTTTTTTCTCCAGCTTGATTTTCTGTTTT
ACTTTTTTATTATCCTGTTTCTTGCGTTGTGTTTATTTTTTTCTTATTTG
TCTGCTTCCTTTTTTATTTATTTTCAAATTTTTTTTCAACTTTCCTCTGC
GTTTTTCGTTCGACTTATTTAGTTATTCACTAATATATTCTTCTATATTA
TCCCTTAGTTTTTTTTTTTTTTATATCTTCTTTTCTATATTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_l08.b1 MSMg01no166_l08.b1 CHROMAT_FILE:
MSMg01no166_l08.b1 PHD_FILE: MSMg01no166_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:17 2005
         (360 letters)



>mm_chr16_37031223_37031985
          Length = 763

 Score =  654 bits (338), Expect = 0.0
 Identities = 352/358 (98%), Gaps = 3/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtattatatcacctctaaatattgcttcctttttccaccctactttatttatt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtattatatcagctctaaatattgcttcctttttccaccctactttatttatt 264

                                                                       
Query: 65  tttttcttaagatcacacctagaatattgaaattgaaagaatctatgattaaaagtttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 tttttcttaagatcacacctagaatattgaaattgaaagaatctatgattaaaggtttag 324

                                                                       
Query: 125 ttttatgaaatttagtttgtatatttagtactcagttttcttctgtaccccacttttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttatgaaatttagtttgtatatttagtactcagttttcttctgtaccccacttttctc 384

                                                                       
Query: 185 acggttacctgctctttgtgacttagaaatgagttactgtgaaataaatgattttttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acggttacctgctctttgtgacttagaaatgagttactgtgaaataaatgattttttcat 444

                                                                       
Query: 245 ataaatgagctattatcactgagacttttctaaatcctgaggccattgtctttgcagtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataaatgagctattatcactgagacttttctaaatcctgaggccattgtctttgcagtga 504

                                                                     
Query: 305 agctgtaaaactgcagacgt---tgtaggatatttaggtttctattacttcttttacc 359
           ||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||
Sbjct: 505 agctgtaaaactgcagacgtcgttgtaggatatttaggtttttattacttcttttacc 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 763
Length adjustment: 9
Effective length of query: 351
Effective length of database: 754
Effective search space:   264654
Effective search space used:   264654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |