BAC Information

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BAC

Clone NameMSMg01-167A19
Chromosome16 (Build37)
Map Location 7,764,618 - 7,765,007
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167A19.T7 (MSMg01no167_a19.b1)MSMg01-167A19.TJ (MSMg01no167_a19.g1)
ACCAG364683AG364684
length767741
length of high quality
(start - end)
393 (46 - 438)667 (75 - 741)
definitionCHROMAT_FILE: MSMg01no167_a19.b1 PHD_FILE: MSMg01no167_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:43 2005CHROMAT_FILE: MSMg01no167_a19.g1 PHD_FILE: MSMg01no167_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGTGTTCATTCGGCCATCACTGTGGAAAGACGCCTGAGGTTAG
CCAAGGTTCTCCCTTCCACCCTCGCTGCAGTCTCTCCCAGGAGACAATAG
AGAGGACGATGGACAGGAGCATAGTCCCTGCTTCTGTGCCTCCCCCCGCC
TGAGGCAGATGAGGCTGGATTTCTTCTGCCAGCCCCCTCTGGGGTGGGCT
TCTGTTGTCACATGTGTATAAACTGGCTTTGCCACTTCATCTTTGCTCTG
ATAGAGTTGATTGCATTAGAAATAGAAACTGACAGAAGCCAGGACGATTC
TCATTCTTCATTTTTAAAATAGGGGCCAATAAGAGCTATGGAGTAATGGC
TAAATTGTATGTGTGTGTGTGGGGGGGGTTGTCTGTCCTTCTCGCTGTCT
CTACTCTCTAGTTTCAACCGGCATTGCAATATACGGTCTATCGACCCGAG
AATTTATCCCCTGGCTATTCGACATTGTGATTTCTCGTCCTTGTTTTTGC
CCTGCTCTTCCTTTTTTTCTCTACCCTGTGCTTTCCTTTTTTTGTCTTCT
ATACTTTATTTTTCTCATTCTCCTTTCATCCTTTCTCCTTATTTACTACC
CTGCTGCCTTATCCTTCCCTCACCCCATACGACTTTATCGTTCTTTCTTT
CTAAATCGTTCCGTTCTCCCCTTATAACATATCTTTACCTTCCATTTTAC
TCCTTTTTTCATACTTA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACTGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAAATGCAAA
TCGAAACAAGCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTAGTGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGACTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTAGCACCAAAGGATCCT
GCAGTACCTCTCCTGGGCAAATATCCAAAAGATGTTCCAACCAGTAAGAA
GGACACATGCTCCACTATGTTCACTGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGACACAGAAAATG
TGGTACATTCACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGAAAATGGATGAACCTGGATTGCATCATCCTGAGTG
AGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATAAGT
GGATATTAGCCCAGAGACTTAGAATACTCAAGATACAAGATACAATTTGC
AAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_a19.b1 MSMg01no167_a19.b1 CHROMAT_FILE:
MSMg01no167_a19.b1 PHD_FILE: MSMg01no167_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:43 2005
         (393 letters)



>mm_chr16_7764414_7765208
          Length = 795

 Score =  729 bits (377), Expect = 0.0
 Identities = 387/391 (98%), Gaps = 4/391 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggtgttcattcggccatcactgtggaaagacgcctgaggttagccaaggttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggtgttcattcggccatcactgtggaaagacgcctgaggttagccaaggttc 264

                                                                       
Query: 65  tcccttccaccctcgctgcagtctctcccaggagacaatagagaggacgatggacaggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccttccaccctcgctgcagtctctcccaggagacaatagagaggacgatggacaggag 324

                                                                       
Query: 125 catagtccct-gcttctgtgcctccccccgcctgaggcagatgaggctggatttcttctg 183
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catagtcc-tcgcttctgtgcctccccccgcctgaggcagatgaggctggatttcttctg 383

                                                                       
Query: 184 ccagccccctctggggtgggcttctgttgtcacatgtgtataaactggctttgccacttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccagccccctctggggtgggcttctgttgtcacatgtgtataaactggctttgccacttc 443

                                                                       
Query: 244 atctttgctctgatagagttgattgcattagaaatagaaactgacagaagccaggacgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atctttgctctgatagagttgattgcattagaaatagaaactgacagaagccaggacgat 503

                                                                       
Query: 304 tctcattcttcatttttaaaataggggccaataagagctatggagtaatggctaaattgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctcattcttcatttttaaaataggggccaataagagctatggagtaatggctaaattgt 563

                                          
Query: 364 atgtgtgtgtgtg--gggggggttgtctgtc 392
           |||||||||||||  ||||||||||||||||
Sbjct: 564 atgtgtgtgtgtgtggggggggttgtctgtc 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 795
Length adjustment: 9
Effective length of query: 384
Effective length of database: 786
Effective search space:   301824
Effective search space used:   301824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)