Query= MSMg01no167_h17.b1 MSMg01no167_h17.b1 CHROMAT_FILE:
MSMg01no167_h17.b1 PHD_FILE: MSMg01no167_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:15 2005
(668 letters)
>mm_chr16_67403328_67404390
Length = 1063
Score = 1085 bits (561), Expect = 0.0
Identities = 601/617 (97%), Gaps = 7/617 (1%)
Strand = Plus / Minus
Query: 5 gaattctacagat-acgattgggcaaatagctcagttattaaatctattgctcaacctta 63
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 611 gaattctacagatca-ggttgggcaaatagctcagttattaaatctattgctcaaccata 553
Query: 64 gagcctgggtttggtgatcagcacccatatggtggttcaccaccatttatgactctactt 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 gagcctgggtttggtgatcagcacccatatggtggttcaccaccattcatgactctactt 493
Query: 124 ccaagggatctgaaacactcctcttacctttacagatactagacatacaaatggtgcatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 492 ccaagggatctgaaacactcctcttacctttacagatactagacatacaaatgttacatg 433
Query: 184 tatacacatataggcaaaaatgtcatgtgtataagatgaaaataatagaaaagttaattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatacacatataggcaaaaatgtcatgtgtataagatgaaaataatagaaaagttaattt 373
Query: 244 gcagtgccttaaagtaatcctatagacaatgagcaaaataaaactatttcttatttaata 303
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 372 gcag-----taaagtaatcctatagacaataagcaaaataaaactatttcttatttaata 318
Query: 304 atttttattaaatattttcttatttagtaattaattggcaattatcaccatacattatac 363
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 317 atttttattaaatattttcttatttagtaagtaattggcaattatcaccataaattatac 258
Query: 364 atataattatatataaaacttctaagacataaagtgtactattaaaatagggaaattcat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atataattatatataaaacttctaagacataaagtgtactattaaaatagggaaattcat 198
Query: 424 tgcaaccttgactgtaagcctataaagaaaaaaaggttgcattcataaatataaacattg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgcaaccttgactgtaagcctataaagaaaaaaaggttgcattcataaatataaacattg 138
Query: 484 ttttcttaatcttactcattttgaagagcttttaacatgactgtctaaacataatttctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttttcttaatcttactcattttgaagagcttttaacatgactgtctaaacataatttctt 78
Query: 544 gagaatgtaagttccagatgttgagttttttcaattcttcttcataagttttcctttggt 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 77 gagaatgtaagttccagatgttgagttttttcaattctccttcataagttttcctttggt 18
Query: 604 gactaatttctaaaggg 620
|||||||||||||||||
Sbjct: 17 gactaatttctaaaggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1063
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1053
Effective search space: 692874
Effective search space used: 692874
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_h17.g1 MSMg01no167_h17.g1 CHROMAT_FILE:
MSMg01no167_h17.g1 PHD_FILE: MSMg01no167_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:15 2005
(508 letters)
>mm_chr16_67340087_67340992
Length = 906
Score = 830 bits (429), Expect = 0.0
Identities = 486/505 (96%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 1 aaatattcagaatgtcacctgccattttagtcttatcagagaaagttgtacctatcgact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aaatattcagaatgtcacctgccattttagtcttatcagagaaagttgtacctatctact 260
Query: 61 gagacatattatttaatccattgactccctcctgtgaaaggattcattctataaaatcag 120
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gagacattttctttaatccattgactccctcctgtgaaaggattcattctatgaaatcag 320
Query: 121 gggtgttaaaactaccaactaaaaataaaacatgatgactattacagagtagaatataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgttaaaactaccaactaaaaataaaacatgatgactattacagagtagaatataat 380
Query: 181 gttgctggtatggtatttaggaaagaaaaagtttcaagatggtttaaatatgaaagtgat 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gttgctggtatggtatttaggaaagaaaa-gtttcaagatggtttaaatatgaaagtgat 439
Query: 241 gccagctaggcagagaacttcaaagattatttcttcaaaataaataaccactatcattaa 300
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 gccagctaggcagggaacttccaagcttatttcttcaaaataaataaccactatcattaa 499
Query: 301 acattaatgcaaaaacacaagaaaaggatgcagtttagatgaaacatctcttgcatttta 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 500 acattaatgcaaaaacacaagaaaaggatgcactttagatgaaacatctcttgcgtttta 559
Query: 361 ggatacaaaagaattatgctttaataataactcgagattactatttttatatttgtatgt 420
|||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 560 ggatacaaaagaattatgctttaataataacttgagattattatacctatatttgtatgc 619
Query: 421 agttttatatgtttcactaattatgtagttgaataaatatcaattttatctctatatatg 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agttttatatgtgtcactaattatgtagttgaataaatatcaattttatctctatatatg 679
Query: 481 aatgtatatatgggggtcctgtgtg 505
|||||||| |||||| |||||||||
Sbjct: 680 aatgtatacatgggg-tcctgtgtg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 906
Length adjustment: 10
Effective length of query: 498
Effective length of database: 896
Effective search space: 446208
Effective search space used: 446208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
