BAC Information

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BAC

Clone NameMSMg01-167H21
Chromosome16 (Build37)
Map Location 31,527,712 - 31,684,704
singlet/doubletdoublet
Overlap geneGm536, Dlg1
Upstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneMfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167H21.T7 (MSMg01no167_h21.b1)MSMg01-167H21.TJ (MSMg01no167_h21.g1)
ACCAG364954AG364955
length717719
length of high quality
(start - end)		673 (45 - 717)539 (77 - 615)
definitionCHROMAT_FILE: MSMg01no167_h21.b1 PHD_FILE: MSMg01no167_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:16 2005CHROMAT_FILE: MSMg01no167_h21.g1 PHD_FILE: MSMg01no167_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,684,036 - 31,684,704)(31,527,712 - 31,528,249)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAACATGCCTAAGGGCTCAGAGCCATAATTGTATTCTTTCTTTAG
TCAAGAACACCAAGAAAATCATCTTTCAAACTACAATGGACATGTTAATA
ATTATACAAATGGAGCTTTCTGAGATCTACCACCAAGACACTAATTTCCT
AAAACAAGTATTTCAGACCTCAAACAAGTTAAAAACTTTAGACAGAATCA
AGATTCTTGACACTTTTAAAGAATATTTTAATTCTATTCTCTATCTCATT
ATTATTTCCAAAATATACCCATCTTAAAAAGAAAATTGATCACTGAGTGA
CTTCAGGAAAACTTTCTCTTACCTCTACTGGAGGGCTAAGGCTGCCGGGC
AGGGTTTCTGACGTCACGGTAGTGCTTGGAAGGCTGGCAATCTCCCAAGT
AGTCACAGGCTGAACTGGTTCACACTGCTTTGAATGATCCACACATTTTG
GATTATCAAGTAAGGTCACTTCATAAAATTCTTGAATATCTATAGATGAA
GAAAAATAAAATCTCAAAATCATTTACATCTACTAAACTATGCAATGTTT
AAAGGCCTCTTTAACTATTAGAAAACTAAGTCCAATTCTACCACAGACTT
CTTTTTCCCCTGAAGACAGGGTTTCTCTGTGTAACAGCGCTGGCTGCCCT
GGAACACTCTGTAGACC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGTGACAGCTCTCCCAGGGGCT
CATGCAGGTAACAGTTTATAATGGCCATCCTGTAGCACTATAGACTTTGC
TCTCTGGGAACTAGAGCCCCAAGGAAGAGAGGTGGGTGCTATAAAAAGAA
GGGAGTACTTGTCAGTCAAGGAAGCCATCTTCACGACATTTGAGCCAGCG
GACTTCTTGGTGGCCATGGTGCTAAAGGCAAGGCTAAAGAGCCAGGACCA
CCATACGGGATGTAGGTGGTTAGACATATAAGGCCCGATTCTCAGCCCTC
GACTAAAAATCAATCACCTCCGCTCCTGCAGAATCTGCTCATCATCCTTA
CCTTGTGCCACAGCCGACTGGACCACAGACAATTGATCCACATTGGTCTA
ATAGAATCCTCTCCCCTAGAAAAGTAGAAGTGGGTTCTAAGAACTACATG
GGAAATTTCTATTATGGTTTAAATGAATGTGTTCTTGCAAAATTCAAATA
CTGGGATCTCATAACAAATGTGATGGGATTAAGAGAGAGGGTCCTGGGGA
TGGAGAGGTGGTGGTCCAGTGCCTACAGCACTTCTTGCTCTTCCCAGAAT
CTGGATTCGAGTCTCACCTTGATTTATGATCTCAGTTCTTCACCCTCTCC
TGGCTTCCTATGATACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_h21.b1 MSMg01no167_h21.b1 CHROMAT_FILE:
MSMg01no167_h21.b1 PHD_FILE: MSMg01no167_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:16 2005
         (673 letters)



>mm_chr16_31683886_31684958
          Length = 1073

 Score = 1255 bits (649), Expect = 0.0
 Identities = 664/669 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaacatgcctaagggctcagagccataattgtattctttctttagtcaagaac 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattcttaacatacataagggctcagagccataattgtattctttctttagtcaagaac 760

                                                                       
Query: 65  accaagaaaatcatctttcaaactacaatggacatgttaataattatacaaatggagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 accaagaaaatcatctttcaaactacaatggacatgttaataattatacaaatggagctt 700

                                                                       
Query: 125 tctgagatctaccaccaagacactaatttcctaaaacaagtatttcagacctcaaacaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tctgagatctaccaccaagacactaatttcctaaaacaagtatttcagacctcaaacaag 640

                                                                       
Query: 185 ttaaaaactttagacagaatcaagattcttgacacttttaaagaatattttaattctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttaaaaactttagacagaatcaagattcttgacacttttaaagaatattttaattctatt 580

                                                                       
Query: 245 ctctatctcattattatttccaaaatatacccatcttaaaaagaaaattgatcactgagt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 579 ctctatctcattattatttccaaaatatacccaccttaaaaagaaaattgatcactgagt 520

                                                                       
Query: 305 gacttcaggaaaactttctcttacctctactggagggctaaggctgccgggcagggtttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gacttcaggaaaactttctcttacctctactggagggctaaggctgccgggcagggtttc 460

                                                                       
Query: 365 tgacgtcacggtagtgcttggaaggctggcaatctcccaagtagtcacaggctgaactgg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgacgtcacggcagtgcttggaaggctggcaatctcccaagtagtcacaggctgaactgg 400

                                                                       
Query: 425 ttcacactgctttgaatgatccacacattttggattatcaagtaaggtcacttcataaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcacactgctttgaatgatccacacattttggattatcaagtaaggtcacttcataaaa 340

                                                                       
Query: 485 ttcttgaatatctatagatgaagaaaaataaaatctcaaaatcatttacatctactaaac 544
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttcttgaatatctatagataaagaaaaataaaatctcaaaatcatttacatctactaaac 280

                                                                       
Query: 545 tatgcaatgtttaaaggcctctttaactattagaaaactaagtccaattctaccacagac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tatgcaatgtttaaaggcctctttaactattagaaaactaagtccaattctaccacagac 220

                                                                       
Query: 605 ttctttttcccctgaagacagggtttctctgtgtaacagcgctggctgccctggaacact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttctttttcccctgaagacagggtttctctgtgtaacagcgctggctgccctggaacact 160

                    
Query: 665 ctgtagacc 673
           |||||||||
Sbjct: 159 ctgtagacc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_h21.g1 MSMg01no167_h21.g1 CHROMAT_FILE:
MSMg01no167_h21.g1 PHD_FILE: MSMg01no167_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:16 2005
         (539 letters)



>mm_chr16_31527512_31528450
          Length = 939

 Score =  948 bits (490), Expect = 0.0
 Identities = 526/538 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtgacagctctcccaggggctcatgcaggtaacagtttataatggccatcctgtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgacagctctcccaggggctcatgcaggtaacagtttataatggccatcctgtagc 260

                                                                       
Query: 61  actatagactttgctctctgggaactagagccccaaggaagagaggtgggtgctataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actatagactttgctctctgggaactagagccccaaggaagagaggtgggtgctataaaa 320

                                                                       
Query: 121 agaagggagtacttgtcagtcaaggaagccatcttcacgacatttgagccagcggacttc 180
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agaagggagtgcttgtcagtcaaggaagccatcttcacaacatttgagccagcggacttc 380

                                                                       
Query: 181 ttggtggccatggtgctaaaggcaaggctaaagagccaggaccaccatacgggatgtagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtggccatggtgctaaaggcaaggctaaagagccaggaccaccatacgggatgtagg 440

                                                                       
Query: 241 tggttagacatataaggcccgattctcagccctcgactaaaaatcaatcacctccgctcc 300
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 441 tggttagacatataaggcccgattctcagccctcgactgaaaaccaatcacctccgctcc 500

                                                                       
Query: 301 tgcagaatctgctcatcatccttaccttgtgccacagccgactggaccacagacaattga 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcagaatctgttcatcatccttaccttgtgccacagccgactggaccacagacaattga 560

                                                                       
Query: 361 tccacattggtctaatagaatcctctcccctagaaaagtagaagtgggttctaagaacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccacattggtctaatagaatcctctcccctagaaaagtagaagtgggttctaagaacta 620

                                                                       
Query: 421 catgggaaatttctattatggtttaaatgaatgtgttcttgcaaaattcaaatactggga 480
           ||  |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 621 cacaggaaatttctgttatggtttaaatgagtgtgttcttgcaaaattcaaatgctggga 680

                                                                     
Query: 481 tctcataacaaatgtgatgggattaagagagagggtcctggggatggagaggtggtgg 538
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcatagcaaatgtgatgggataaagagagagggtcctggggatggagaggtggtgg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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