BAC Information

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BAC

Clone NameMSMg01-167J10
Chromosome16 (Build37)
Map Location 65,496,283 - 65,496,716
singlet/doubletsinglet
Overlap genenone
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167J10.T7 (MSMg01no167_j10.b1)MSMg01-167J10.TJ (MSMg01no167_j10.g1)
ACCAG365021AG365022
length735737
length of high quality
(start - end)
438 (46 - 483)502 (74 - 575)
definitionCHROMAT_FILE: MSMg01no167_j10.b1 PHD_FILE: MSMg01no167_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:23 2005CHROMAT_FILE: MSMg01no167_j10.g1 PHD_FILE: MSMg01no167_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAAAGCCCTAGAAAAGATCAGAATGCACTGCATGAGTGAAGGC
CGCACTAGTGAAATATTAGTTAATCGTCTGGGGTCTCTTTTTATGGGTTC
AATAGAGAGGTAGGCGTGGTGGTTTGAATGACCAGTTTCTCAAGTAGGTG
CGTGTAGTTGAACATTTGGTTCCTAGCTGGTGGCACTGAGAGGAGGAGCA
GCCTTGCTAGAGGAAGACGGTCCCAGGGAGCAGGCGTTGAGAGATTATAG
CCTCCCCCAACTTTTAGTTCCCTCTCTGCTTTGTGTTGGAGGTTGTGGGT
GTGCTCTCTAAGCTTCCTGCCCGGATGTAAGTTGCTGTGCCCCCTGTGGC
ATTGTGGACTTCCCCTCTGGATGCCTAAGCAAAGTAAACCTTCATACACT
ACCCGTGGTTATTATTTCTTATTGCAGAATCAGGAAAGTAGCTATCGTGG
AATTTTGGATAGTTCTCTATTATCATTGATAGACTCATGTAATATTTTTT
TTCTTCTGAGCATGCCTCTTACCCACGATGCTTCTCATATCAAATGTACG
AACTTCCATAGACCTCAGAGGGCACTTGAGGGAATCTCTCTACCAGTTCC
CTTGAAGGATTCTAGGCCCCCGAGTGTTCTTGTTGCCCAATTCTGTGCAG
CCCCCTTAGACGCTCTCTCCTATTCTTTCCTTCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAATGACAGTATCTAGTACGTATAGT
GCCTTTTCTTGTAATTGTTTTTCAAACACTAATTTGATCCTTAAGAAATC
CATGTAGACCAAGCAACTGATCATTATCCCTTCTTTTACAAGTGAGGAAA
ATGTGACAGAGGAGGTTAAATAAATTGTTTGCTAAATCGTTCAATGGCTA
GTGAATTGCAGTGAGACAGGTGGCAAGGTGCTCCAGGACAGAGCAATTTT
CTGGCATTCAGATGTCCTGAGTTCAGTTCTCAGAATCTTTCCCTTTTTCT
TTTCTTTATTTTAAGGTTTGAGATGTAACATTGTTCCCACTTCTGCATCT
CAAGGCTGTGATTTTTGCCCCGTTTGGGCTGGTCTTGCCCATGCTGTCCT
AATCTCTGTGAATTCATATGTGCATCAATGCTCTCGTGTCTAGAAGTAGC
TGCTTCCGTGTCATCCACCATCTGTGATTCATGCAATCATACCATCTCCT
CTTCATCAGAGATCTAACGAAGAAGCCATCTGCAACTGATACCTGCTGGG
GAAGAATAAAAATTCTTTTTCTCCAGTAGCGCGCCATGCAGTATGCCTTT
GAATATTCTAGGTAACACCCTTTGACGAGGAATCGTTGGCCACTACAAAG
CAGACATCATGTCTTCAGTCTTTTAATTTACTATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_j10.b1 MSMg01no167_j10.b1 CHROMAT_FILE:
MSMg01no167_j10.b1 PHD_FILE: MSMg01no167_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:23 2005
         (438 letters)



>mm_chr16_65496079_65496916
          Length = 838

 Score =  762 bits (394), Expect = 0.0
 Identities = 424/434 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaagccctagaaaagatcagaatgcactgcatgagtgaaggccgcactagt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaagccatagaaaagatcagaatgcactgcatgagtgaaggccgcactagt 264

                                                                       
Query: 65  gaaatattagttaatcgtctggggtctctttttatgggttcaatagagaggtaggcgtgg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gaaatattagttaatcgtctggggtctctttttatgggttcaatagagaggtaggcctgg 324

                                                                       
Query: 125 tggtttgaatgaccagtttctcaagtaggtgcgtgtagttgaacatttggttcctagctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 tggtttgaatgaccagtttctcaagtaggtgcgtgtagttgaacatttggtccctagctg 384

                                                                       
Query: 185 gtggcactgagaggaggagcagccttgctagaggaagacggtcccagggagcaggcgttg 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggcactgagaggaggagcaaccttgctagaggaagacggtcccagggagcaggcgttg 444

                                                                       
Query: 245 agagattatagcctcccccaacttttagttccctctctgctttgtgttggaggttgtggg 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagattatagcttcccccaacttttagttccctctctgctttgtgttggaggttgtggg 504

                                                                       
Query: 305 tgtgctctctaagcttcctgcccggatgtaagttgctgtgccccctgtggcattgtggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgctctctaagcttcctgcccggatgtaagttgctgtgccccctgtggcattgtggac 564

                                                                       
Query: 365 ttcccctctggatgcctaagcaaagtaaaccttcatacactacccgtggttattatttct 424
           ||||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 565 ttcccttctggatgcctaatcaaagtaaacctttatacactacccatggttattatttct 624

                         
Query: 425 tattgcagaatcag 438
           |||| |||||||||
Sbjct: 625 tattacagaatcag 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)