BAC Information

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BAC

Clone NameMSMg01-167P17
Chromosome16 (Build37)
Map Location 21,008,294 - 21,008,953
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060
Downstream geneLOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167P17.T7 (MSMg01no167_p17.b1)MSMg01-167P17.TJ (MSMg01no167_p17.g1)
ACCAG365303AG365304
length729727
length of high quality
(start - end)		673 (46 - 718)444 (76 - 519)
definitionCHROMAT_FILE: MSMg01no167_p17.b1 PHD_FILE: MSMg01no167_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:53 2005CHROMAT_FILE: MSMg01no167_p17.g1 PHD_FILE: MSMg01no167_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTGAACGCCCTGATCAACAACACAAAAGATGTTTTCTTATACT
TAGTACTGGAGTTTTTGATTTAGAGGGACAATGGTTCTTAGGGGAGTATT
GTCAGCCCAAGTGGCACACACACACACACACACACACACACACACACACA
CACACAATTTAAGTTCTGAAAAAGCTGTTTCTATAACTACGCATTTATTA
TAAAACTGACAATGCTCCAGCATATTTCTGTAGTAAAATGAAAATTTTTT
GCACATTATAATATAAAGCATATTGCAGGTATACCACACAATCCTACAGG
GCATGTATTTTTATAGAAATCTAATCGCACTTTAGAGATTTTTAATAAAT
CTGACATTAAGAAATTGCTTCAAATACCTTTGGATAACCTATATTCATAA
GTCTAATGTCCATTCCTTCCACATCTTCTACATTTCACAGGAAACTTTGT
TCCTGAATTATTAGTATTAAAGAAGAATTTATACTTAGGAACTGTTTGTC
TTCAGTCCTTTAGGGAATGACCTGACTTTTGACAAGCACAGCAATGGATA
TTTTATGGTTTTACATCTCCTGTAATTGTTTGTCTAACCATAACTGAGTT
GTGAGCATTAGGTTTTATATCCACAGTACTTTTAATCCATTCATAAAGAG
GTACAAATCTGGCACTTATAGGTCTAGTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TTTAATGGGGTTATGGGGATCCATCCCATAATCAGCCTCCAAATGCTGAC
ACCATTGCATACACTAGCAAGATTTTGATGAAATGACCCAGATATAGCTG
TCTCTTTTGAGGCTATGCCAGGGCCTAGCAAACACAGAAGTGGATGGTCA
CAGTCAGGTATTGGATGGATCACAAGGCCCCCAATGGAGGAGCTAGAGAA
AGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAAT
ATGAACTAACCAGTACTCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAT
CAGAAGATGGCCTACCCAGCCGTCACTGGAAAGAGAGGCCCATTGGTCTT
GCAAACTTTATTTGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGG
AGTGGGAGGGTAGGGGAGTNNNNNNTTCTCTTCCACCTNTCTTTGCCTTT
TTTTCTTTTCCTCGCCATCTTTCCCCTTTTTCCTCCCCTTTTTACTCTCT
TCTTTTTCCTTTTTTCTTCCCTTTATTATCCCCCTCCCCTTATTTCCTCT
CTTTTTCTCTATTTCCCCCATCATTATTCCCTATTTATTTGTCTATCATC
CTCCCTTATACACTCACTCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_p17.b1 MSMg01no167_p17.b1 CHROMAT_FILE:
MSMg01no167_p17.b1 PHD_FILE: MSMg01no167_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:53 2005
         (673 letters)



>mm_chr16_21007917_21008989
          Length = 1073

 Score =  890 bits (460), Expect = 0.0
 Identities = 606/700 (86%), Gaps = 77/700 (11%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctcttgaacgccctgatcaacaacacaaaagatgttttcttatacttagtactgg 64
            ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 1037 gaattttcttgaacgccctgatcaacaacacacaagatgttttcttatatttagtactgg 978

                                                                        
Query: 65   agtttttgatttagagggacaatggttcttaggggagtattgtcagcccaagtggcacac 124
            |||||||||||||||| |||||||||||||||||||           ||||||||     
Sbjct: 977  agtttttgatttagagagacaatggttcttagggga-----------ccaagtgg----- 934

                                                                        
Query: 125  acacacacacacacacacacacacacacacacacacaatttaagttctg-aaaaagctgt 183
                                    ||||||||| |||||||||| |||| ||||||||||
Sbjct: 933  -----------------------tacacacacatacaatttaagctctgaaaaaagctgt 897

                                                                        
Query: 184  ttctataactacgcatttat------tat-----------aaa----------------- 209
            || ||||||||| |||||||      |||           |||                 
Sbjct: 896  ttttataactacacatttattagaagtatggccattttggaaatacctgtaccaattaag 837

                                                                        
Query: 210  actgacaatgctccagcatatttctgtagtaaaatgaaa-attttttgcacattataata 268
            ||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 836  actgacaatgctccagcatatgtctgtaataaaatgaaacattttttgcacgttataata 777

                                                                        
Query: 269  taaagcatattgcaggtataccacacaatcctacagggcatgtatttttatagaaatcta 328
            ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 776  taaagcatattgcaggtataccacacaatcctacaggacatgcatttgtatagaaatcta 717

                                                                        
Query: 329  atcgcactttagagatttttaataaatctgacattaagaaattgcttcaaatacctttgg 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  atcgcactttagagatttttaataaatctgacattaagaaattgcttcaaatacctttgg 657

                                                                        
Query: 389  ataacctatattcataagtctaatgtccattccttccacatcttctacatttcacaggaa 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  ataacctatattcataagtctaatgtccattccttccacatcttctacatttcacaggaa 597

                                                                        
Query: 449  actttgttc-ctgaattattagtattaaagaagaatttatacttaggaactgtttgtctt 507
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  actttg-tctctgaattattagtattaaagaagaatttatacttaggaactgtttgtctt 538

                                                                        
Query: 508  cagtcctttagggaatgacctgacttttgacaagcacagcaatggatattttatggtttt 567
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 537  cagtcctttagggaatgacctgacttttgacaagcacagcaatggacattttatggtttt 478

                                                                        
Query: 568  acatctcctgtaattgtttgtctaaccataactgagttgtgagcattaggttttatatcc 627
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 477  acatctcctgtaattgtttgtctaaccataactgagttgtgagcattagattttatatcc 418

                                                    
Query: 628  acagtacttttaatccattcataaagaggtacaaatctgg 667
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 417  acagtacttttaatccattcataaagaggtacaaatctgg 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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