BAC Information

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BAC

Clone NameMSMg01-168L19
Chromosome16 (Build37)
Map Location 77,377,788 - 77,378,072
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039316, 1700063K16Rik, LOC665120, Usp25
Downstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L19.T7 (MSMg01no168_l19.b1)MSMg01-168L19.TJ (MSMg01no168_l19.g1)
ACCAG365824AG365825
length709710
length of high quality
(start - end)
317 (43 - 359)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no168_l19.b1 PHD_FILE: MSMg01no168_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:10 2005CHROMAT_FILE: MSMg01no168_l19.g1 PHD_FILE: MSMg01no168_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAATTTCATTAATATTTCCAGAGTATGTATACTACATTTCATTGTTT
TCCTTCATCAGTTGAGAGTCATCAAGGCTGCTTCAATTTTGTGGATACTG
AGAATACAGTAAGGATAGATGTGGATAATCCAGTGTCTCTGTAGTAGAAT
ATAGATGGCAATGAATTTTTTCCATTCTAGGCACAGACTTTTTATGCAGA
TGATGGTGTCATTTGCTATAAAGAAGATTTTTAGTTTAACAGCGGTCTCA
TTTGTTAGTTGTTAGCCTTAATGCCTGCAATATGAGCATCTTATTTGGAA
AATCCTTTCTTGTGTCTTACCCCCCCCTGTATGTCCTACTTGATTTTGTA
TAATATACAGGGATCAATTCTTGTGATGAGGTCCTTGATTATTTGTAGTT
GAGTTTTGAAAAGTTGAAAAATAAGAATGTAGTTTCACACACACAGACCC
ACACACTCTTCATCTACCAAATTTGATGAGTATTATTTGCGCAATATTCT
GGAGCCTCTATTTTATGTACAGACTCATGTCATGCTTAAATAAGGAAATG
TCTGCCCCCTCCGTTTCCATTTTTAATCTAAGTGACCCCCTTCTCTTGTC
TTTTTTTCTCTACCCATTTTAGATGTTATGTACCTTACTGTCATCCCTTC
TTCCCTTCG
NAATCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGGACCAGTCACAAAAGC
CAACCAAATACATTAATCAAATTATCTTATCCAAGAAGTGTCTAGGTGTA
ATCCTAACTAATTTTGCATAGATATGAATTCCAGGATGTTTCTGGTACTG
AATGAAAAGCAAGGAACAAAATCAGGCTTGCTTTACGTTTTCCCTGTCAT
CTTCCTGCAGGCTTCTTATAGTACTTGATGAACAAATTTACGTTGTTAAG
CTTCCTTAGTGGAGTGAGGAATTTTGGTTTTGGCACAATGGAATCCCTAA
GAGAATGTTTCTAGTTGGTTTCCCCACGCCGNCCTAGAATACCGTGTATG
TTTTTAAAGGAGGGAACTCAGGATATAAATAAAAGATATTTTGATGCGGC
TTTAATCTTTAAAATATTATGCTTCTAGTGTATTTCTGTTTGTCATAACC
AAAGTATTTGATACTCAAAGGGAAATTTGCCTCATGTGAATAAAAAGTCT
CAACTATACAGTTCAGATAACAGATAATTAAACATCCTACCAAGACCAAA
GATACTGTACAGATATTTGAGCCTGTCCCTTCAGCAATCATCAGACTATT
GAGAAGATGGGCACCTTGTAACTTCCCCTAGATTTTCAGGTGGCAACAGG
AAATGATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l19.g1 MSMg01no168_l19.g1 CHROMAT_FILE:
MSMg01no168_l19.g1 PHD_FILE: MSMg01no168_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:10 2005
         (285 letters)



>mm_chr16_77377588_77378272
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttggaccagtcacaaaagccaaccaaatacattaatcaaattatcttatccaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 485 tttcttggaccagtcacaaaagccaaccaaatacattaatcaaattatcttattcaagaa 426

                                                                       
Query: 61  gtgtctaggtgtaatcctaactaattttgcatagatatgaattccaggatgtttctggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgtctaggtgtaatcctaactaattttgcatagatatgaattccaggatgtttctggta 366

                                                                       
Query: 121 ctgaatgaaaagcaaggaacaaaatcaggcttgctttacgttttccctgtcatcttcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgaatgaaaagcaaggaacaaaatcaggcttgctttacgttttccctgtcatcttcctg 306

                                                                       
Query: 181 caggcttcttatagtacttgatgaacaaatttacgttgttaagcttccttagtggagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caggcttcttatagtacttgatgaacaaatttacgttgttaagcttccttagtggagtga 246

                                                        
Query: 241 ggaattttggttttggcacaatggaatccctaagagaatgtttct 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggaattttggttttggcacaatggaatccctaagagaatgtttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)