BAC Information

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BAC

Clone NameMSMg01-169E16
Chromosome16 (Build37)
Map Location 74,651,069 - 74,651,350
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169E16.T7 (MSMg01no169_e16.b1)MSMg01-169E16.TJ (MSMg01no169_e16.g1)
ACCAG366205AG366206
length717695
length of high quality
(start - end)
320 (46 - 365)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no169_e16.b1 PHD_FILE: MSMg01no169_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:56 2005CHROMAT_FILE: MSMg01no169_e16.g1 PHD_FILE: MSMg01no169_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATT
CCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGTATGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTTTTATTGGCCCGAAGANACCTGCTCCACTATGT
TCATAGCAGCATTATTTATAATAGCCAGAAGCTGAAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAA
AAATGAAGACTGAAGTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGCATAACCTTGTCTAATATAA
GGGACACAGTTATATTAGGAGCACAGTCACATTTTACAGTGGGAGTTATC
AAATTTGCTGGTCCTAAATAAAGTACACCTGGGGTACCTTAAATTTTATG
TTTTATAATAAGCTTCACAATAAGGCAAATTTGAGTAGTTATCTAGAAAA
ATCACAGTAGTGGAAAAGAAATTGGTGTGGAACATGGACAATTTTAAAAT
ACTAACTTAGGATTAAGAAATTGTGTTAGTGTAGGATACTTAGTTAATGT
AAACAAACTTTTTGTATTTGCCCCCCCCACATCCAGAGTCCATAACATTG
CAAAGACGGGTTTGGAAATTCTGCTCAATTCAGCAAAACTCTCATATGCA
GTACCCAGTATTTTAAAATTAAAGCCATTTATTCAGCAGATGAGAAATTA
GAGTTATTACTTATCTCATACATAATTCTACCAGTCATCCTGGTAGCAAT
CATTTCTCTCCATAATATCTCCTTACGAAAAGTCAATAATCTTTTCGCAG
AGGATAATAACTTACACAATGAATGTGAAAAGAGTGTTCAGCTCCTTTGT
GCAATCAACTCGATGTCTTTTGTTAAGTATGTATGACTTCAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_e16.g1 MSMg01no169_e16.g1 CHROMAT_FILE:
MSMg01no169_e16.g1 PHD_FILE: MSMg01no169_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:56 2005
         (282 letters)



>mm_chr16_74650869_74651550
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcataaccttgtctaatataagggacacagttatattaggagcacagtcacatttta 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 actgcataaccttgtctaatataagggacacagttatattaggaacacagtcacatttta 260

                                                                       
Query: 61  cagtgggagttatcaaatttgctggtcctaaataaagtacacctggggtaccttaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgggagttatcaaatttgctggtcctaaataaagtacacctggggtaccttaaattt 320

                                                                       
Query: 121 tatgttttataataagcttcacaataaggcaaatttgagtagttatctagaaaaatcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgttttataataagcttcacaataaggcaaatttgagtagttatctagaaaaatcaca 380

                                                                       
Query: 181 gtagtggaaaagaaattggtgtggaacatggacaattttaaaatactaacttaggattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gtagtggaaaagaaattggtgtggaacatggacaattttaaaatactaacttaggtttaa 440

                                                     
Query: 241 gaaattgtgttagtgtaggatacttagttaatgtaaacaaac 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaattgtgttagtgtaggatacttagttaatgtaaacaaac 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)