BAC Information

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BAC

Clone NameMSMg01-169F07
Chromosome16 (Build37)
Map Location 67,164,056 - 67,164,420
singlet/doubletsinglet
Overlap geneCadm2
Upstream genenone
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169F07.T7 (MSMg01no169_f07.b1)MSMg01-169F07.TJ (MSMg01no169_f07.g1)
ACCAG366234AG366235
length773747
length of high quality
(start - end)
313 (106 - 418)365 (383 - 747)
definitionCHROMAT_FILE: MSMg01no169_f07.b1 PHD_FILE: MSMg01no169_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005CHROMAT_FILE: MSMg01no169_f07.g1 PHD_FILE: MSMg01no169_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTTTTTTTTTTTTTTTTCTCTTTTCTAACTTCCCCCCTTTACCCC
CNTTTGTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAAAGGATTTTAAATCATAAAACAGTTTGTGAGGT
ATGTATGGTTACAATGTATGTTATATTTTACAAGAGATGGGTGAAAACAA
AATTCATTCCAATTTTACTTTAATTTAAAATGTTTTTTCTTTTTTATAAG
CTGTAATTAAAATTAAAATTTTACATTAGATCCACCAACCTGCCTCATAG
TTGTCAGGCTTTTCTGATAAAAACTTGAAGACTCCAAGCTCTCTCCACCA
CTACACTTGGGTCATTGCTGCATTTCCAATATGCAAGATGTGCAGGAAGG
CCAGTCCAGTATAGACTTTTTTCNCTTACCNAATCAANCCCCATCTCAAA
GATTTTTTTCATGTGTCATATATTCTGAAATTAGAAAAATTTAAATTTGT
AATGCCGTCACTTAAAACAGTTCCTATAATTTGGTTAAAAACTTTAGATT
CAATGGTTATTAAGTATACTAAACAGAATCCTGCAACATTACATCAAGTG
AATAATATCCCAGAGACTGATCCATGATCCTACGAGCATACTTATATTGG
TCTGAGGTCTCCTGCTCTTATTTTGTATAGGACTGTCTTGCCTGGCCTCT
TTGTCCCGAAGTGTGCCTATTCCTGTAAAGACTTGACGCTCCAAGGTGTC
TGTAATCACCCCATATTATTAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACTAAGCTTGTCTAGTTGGC
TAGAGAGCCGAAAGGAATATCCTCTCTCTGTCTCCACTCTACCTGGCAGC
TGCCTGTAGCATTTCACAGAATTCTGTAGACCAACCTCTGGTCCCTATGT
GTGCAAGGCAAATACTTTTATGACTGAGTTCTCTTGCCAGGCCTAAATTT
AATTTTCAAAGCAATGTTTTACAAATGATGCACGAGACCAATAAAAACAT
AAAAATAAGGATATTCATAGTAATTTGGCATATTTCGGTTGTAAAGAACT
GATATAAAATTATTATTATTTTGCCAAATTTCACCGTACACAGGTTATAC
GTCTTTATGCATAGAGAAAGATATAGGTTATACAGGAATTGTGTGTGATA
TAGGATTTTTAAAATATAATATTAAAGGCAGCAGTTAAGAAGAGAGAGTA
CCAAGAGAAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCA
GTTCTTCACAGATGTAGAAAGAGCAATTCCCAAATTAATTTGGAATAACA
AAAAACCGAGGATAGTGAAAACTAATCTCAACAATAAAGCCATTTATTCT
ACCACAAAATTTATATTTTTAATCTTCACCTTTACAAATCGTGCAGGAAT
TCAAGGCTAATCTGTATTATACGAGACTAGATTGTATGCTCAAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_f07.g1 MSMg01no169_f07.g1 CHROMAT_FILE:
MSMg01no169_f07.g1 PHD_FILE: MSMg01no169_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:59 2005
         (365 letters)



>mm_chr16_67163856_67164620
          Length = 765

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgtacacaggttatacgtctttatgcatagagaaagatataggttatacaggaattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgtacacaggttatacgtctttatgcatagagaaagatataggttatacaggaattgt 260

                                                                       
Query: 61  gtgtgatataggatttttaaaatataatattaaaggcagcagttaagaagagagagtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgatataggatttttaaaatataatattaaaggcagcagttaagaagagagagtacc 320

                                                                       
Query: 121 aagagaaatctacagattcaatgcaatccccattaaaattccaactcagttcttcacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagaaatctacagattcaatgcaatccccattaaaattccaactcagttcttcacaga 380

                                                                       
Query: 181 tgtagaaagagcaattcccaaattaatttggaataacaaaaaaccgaggatagtgaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tgtagaaagagcaattcccaaattaatttggaataacaaaaaacccaggatagtgaaaac 440

                                                                       
Query: 241 taatctcaacaataaagccatttattctaccacaaaatttatatttttaatcttcacctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatctcaacaataaagccatttattctaccacaaaatttatatttttaatcttcacctt 500

                                                                       
Query: 301 tacaaatcgtgcaggaattcaaggctaatctgtattatacgagactagattgtatgctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaaatcgtgcaggaattcaaggctaatctgtattatacgagactagattgtatgctca 560

                
Query: 361 aggtc 365
           |||||
Sbjct: 561 aggtc 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)