BAC Information

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BAC

Clone NameMSMg01-169L18
Chromosome16 (Build37)
Map Location 60,810,337 - 60,810,642
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L18.T7 (MSMg01no169_l18.b1)MSMg01-169L18.TJ (MSMg01no169_l18.g1)
ACCAG366514AG366515
length725727
length of high quality
(start - end)
311 (37 - 347)---
definitionCHROMAT_FILE: MSMg01no169_l18.b1 PHD_FILE: MSMg01no169_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:30 2005CHROMAT_FILE: MSMg01no169_l18.g1 PHD_FILE: MSMg01no169_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGA
ATGCTTTGAATGCAAATAAACCTCATTTCTTAACTTATAATTTTACTATC
AAATGCTCATAGTAATTGTCAGTTGCACTCGTGGGAAACGAGCATGATTA
AGCTACTTAAGCGATGGATAAATCTCAGGAAAAAATCATAGCTGAATGTG
CTATGACCAAGCGAGACACAGTTAGAGTAAATGAGTAACTGAGGGTTGTG
GTTGGAACAAAAATTAAGGTTCCCTCAATGCCTTTCCCTGTCACTGTCTG
TGCTTCTTGATCCTCAGGAAGTGAACATCCCTACTCTGCGTATGATTTCA
CTACATTCAAAAGCAGANAACTGGNACTGTAAAAGTAGAGCTACATGCCT
ATGGATTCAAAACTCAGNNAATGATGGTGGCCGCATCTTTTCTTCACTTC
TCTTGTTCAAGATTTTGTCACAGTAATGAAAAGTGAAAAACACACATACC
CTTTCCAGTTATAACATTTATTTTATTTTTCTCTCAAAAAACCTTAAAGA
CAATCTTAGTCATCGTTCATGTCATATTGATTCACCAGTACCTTAGCAAT
TATGCAGAGTTTCTGATAGAACGATGCCCCACAAAACAAAATAACTATAA
GGAATATTAGAGATTTACTTGTGTGCTTTTTAAGATTATTTAACAATAAT
TAAATAATTGCACACCTATGAAGTA
GCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGGGCATTTATGAAGGCCAATAG
AATTTTTTGACAAAAAAGGATACAACAGTTGGTTAACTCCGGGAGGCCGG
GCTTTGCTAATGAATAACGTTGGACATTAAAAGAAAAAATAAGGATTAGG
TTTAATGTAAAACTTTAAACCAACAAAACTTCACATGATACACTTATCGC
ACTAACATCCCGAACCATCACAGAACTACTCTTTCGGTTGGGGAAAAAAA
TGGATTTTGGCCCCCTAAACAATTATTGTTTGGGGGTCCCTAAAATTCGG
AGCCAAAATAAATTAAGGTGAATTTCACACACACCCTTTTCTAAATATAT
AAAATTCCATGGATCTTGGGTACCAAAAAATNCAGGAAAAAAGGAGGGTG
CGGGGGGCAAAAAAACTATGAAAATCCAAATTTCCAAGGCAAAATGGCCT
TTTTTAAAAATAACCCAGGTTTAACCCTTAAAAAATCCAACCCCGGCCCA
GATAACCTCTAAAAGGATATAAACTCATAAAATCATGCCCTAAGGCTTTA
TATCCAAAATAGTCCATAACACGGCATGATTCCCAGCATACTTACACACG
CGAACCCCTACTACCGTTCGGTAGGGAAACACGGCTTTACTGACCACCCC
CGAAGGACTAGCCGCCGAAACCGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l18.b1 MSMg01no169_l18.b1 CHROMAT_FILE:
MSMg01no169_l18.b1 PHD_FILE: MSMg01no169_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:30 2005
         (311 letters)



>mm_chr16_60810133_60810843
          Length = 711

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaatgctttgaatgcaaataaacctcatttcttaacttataattttactatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcatgaatgctttgaatgcaaataaacctcatttcttaacttataattttactatc 451

                                                                       
Query: 65  aaatgctcatagtaattgtcagttgcactcgtgggaaacgagcatgattaagctacttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaatgctcatagtaattgtcagttgcactcgtgggaaacgagcatgattaagctacttaa 391

                                                                       
Query: 125 gcgatggataaatctcaggaaaaaatcatagctgaatgtgctatgaccaagcgagacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcgatggataaatctcaggaaaaaatcatagctgaatgtgctatgaccaagcgagacaca 331

                                                                       
Query: 185 gttagagtaaatgagtaactgagggttgtggttggaacaaaaattaaggttccctcaatg 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 330 gttagagtaaatgagtaactgagggttgtggttgggacaaaaattaaggttccctcaatg 271

                                                                       
Query: 245 cctttccctgtcactgtctgtgcttcttgatcctcaggaagtgaacatccctactctgcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cctttccctgtcactgtctgtgcttcttgatcctcaggaagtgaacatccctactctgcg 211

                 
Query: 305 tatgat 310
           ||||||
Sbjct: 210 tatgat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)