BAC Information

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BAC

Clone NameMSMg01-169O22
Chromosome16 (Build37)
Map Location 84,792,782 - 84,793,095
singlet/doubletsinglet
Overlap geneJam2
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39
Downstream geneAtp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O22.T7 (MSMg01no169_o22.b1)MSMg01-169O22.TJ (MSMg01no169_o22.g1)
ACCAG366654AG366655
length694650
length of high quality
(start - end)
317 (45 - 361)366 (77 - 442)
definitionCHROMAT_FILE: MSMg01no169_o22.b1 PHD_FILE: MSMg01no169_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:45 2005CHROMAT_FILE: MSMg01no169_o22.g1 PHD_FILE: MSMg01no169_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATTTTGATACAAGATTGATCCACTAAATGCTGATTAAAATCCC
TGCCGCTGCCCAGTAACTGCACAGCATCTACTTACTGCGATGGCGCTCAA
ATAATTCTCCCAAAAAGCACAACGCTCCCTCCTTTTTAAAAATTTAATCA
TTTTGCTTTTTAAGGATGGCTGGATTTTTTAAATGACTTATTTATTTTCA
TTTCATGTGTATGAGTGTCCAAGGAAACCAGATTCCCTGCAATTTAAGTT
ACAGCTGGTTGTAAACCCCCATGTGAATGCTAGGAACTGAACCTGATTCC
TCTTCAGTGTGCTTATTTGCTGACCCATAGCTTCAGAGCATACATTTATT
TTATTTGGGAAGCACATACATGAGTGCTGAATTCACACCACTCCTATCTT
CCTCCCCCATCCAACTGTTTACCTATGCCCCACCCTAAAATTCACAATCC
TCTTTTCTATTATCATTCTTTGATGTGTATATATATATATATATATATAT
ATATATATATATATATATATACACACACGTGTGCAAATATGTACACACAT
ATATACGGAGACTAACATTGCCTGCATGTCCATGTATCCAGGGATGACCC
CATAGGATAGAACAGTCTATATGGGAGCTTGAACCTGTAGGAGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATAAAT
GAGAAGCACCTGAAAACATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCATACCAGTCAGAATGGCTAAGA
TCAAAAATTCATGTGATAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTAGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTGCATATATCCAGAAGTTGTTCCAACCGGTAAG
AAGGACACATGCTCCCCTATGTTCATAGCAGCCTTATTTATATAGCCGAG
ATGTGGAAAAACAGAGCATGCCCCTTAAAAGAAGAAATGGAAAAAACAAA
AGGGGGGACATTTTTAACCGGGGGGGGGGACCCCCCCCCCCTTTTTTAAA
AAAAATGTTTTTTAATTCCTCCAAAGGGGGGGGCGGGGGGGGNNCCCCNN
NNNNNNNNNNNNNNNNAACTTTTTGGGGGGGGAAAGACAACAAAAAANNN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o22.b1 MSMg01no169_o22.b1 CHROMAT_FILE:
MSMg01no169_o22.b1 PHD_FILE: MSMg01no169_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:45 2005
         (317 letters)



>mm_chr16_84792687_84793403
          Length = 717

 Score =  540 bits (279), Expect = e-158
 Identities = 306/315 (97%), Gaps = 2/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcattttgatacaagattgatccactaaatgctgattaaaatccctgccgct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggaattcttcattttgatacaagattgatccactaaatgctgattaaaatccctgccgct 350

                                                                       
Query: 64  gcccagtaactgcacagcatctacttactgcgatggcgctcaaataattctcccaaaaag 123
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 349 gcccagtaaatgcacagcatctacttactgcgatggtgctcaaataattctcccaaaaag 290

                                                                       
Query: 124 cacaacgctccctcctttttaaaaatttaatcattttgctttttaaggatggctggattt 183
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 289 cacaacactccctcctttttaaaaatttaatcattttgccttttaaggatggctggattt 230

                                                                       
Query: 184 tttaaatgacttatttattttcatttcatgtgtatgagtgtccaaggaaaccagattccc 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 229 tttaaatgacttatttattttcattttatgtgtatgagtgtccaaggaaaccagattccc 170

                                                                       
Query: 244 tgcaatttaagttacagctggttgtaaacccccatgtgaatgctaggaactgaacctg-a 302
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 169 tgcaatttaagttacagctggttgtaaacccccatgtgaatgctacgaactgaacctgca 110

                          
Query: 303 ttcctcttcagtgtg 317
           | ||||| |||||||
Sbjct: 109 t-cctctccagtgtg 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)