BAC Information

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BAC

Clone NameMSMg01-170F01
Chromosome16 (Build37)
Map Location 51,192,055 - 51,192,370
singlet/doubletsinglet
Overlap genenone
Upstream geneBbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F01.T7 (MSMg01no170_f01.b1)MSMg01-170F01.TJ (MSMg01no170_f01.g1)
ACCAG366923AG366924
length732679
length of high quality
(start - end)
320 (48 - 367)293 (58 - 350)
definitionCHROMAT_FILE: MSMg01no170_f01.b1 PHD_FILE: MSMg01no170_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:14 2005CHROMAT_FILE: MSMg01no170_f01.g1 PHD_FILE: MSMg01no170_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTGAAAAACAAACCAATTATTAAGAAACAAGAGTCACCTACA
ATGCCCTTCCCTGCCAGATAAAGGATAGGAAGCTCATGCTAAATGTCACA
ATAGCAAATAAAGTCCTAAATCAGGAGATCCACTTGGCTTTTTCACTTAG
CCCTCTAAATTATTAGTTTTATTGCTGGCCATAAAATTATTTAGCTCATC
TTGAAATTCAGTTACAAAATAGACTCTGTTGACCTCTTGTAATTATAACA
GTTTATATCAACATGTGACACAATGTCAGTTATTTGACTCAGGTTTATGA
AAACAGTGGTTACACTGAGGAAATCTCATGGGGTGTTTTGGGGACAGGAA
AACAATGGGTATATTTGCAGGTGACAATAGAAAAGGGTATTCTAAGTTTC
TGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCTTTTGT
GATTGGGTTACCTCACTCAGGATGATGCCCACCAGGTCCATCCATTTGCC
TAGAAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTG
TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTG
GGGTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGT
GGAGCATGTGTCCTTCTTACCGGGTGGGACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTTCCTGCTGCCTGCAGACTCAGAGGTAGAAGTTTCAGCTCC
TTCTCCAGCACTCTGTCTGCCTGCATGCCATCATACTTCCCACTGGGATG
CTAATGAACTAAACCTCACAAACCTTAAGCCAATCCTAATTAAATGGTTT
CCTTTATAAGGATTTCTGTTTTCCTGGTGTCTTTTCACAGAAATAGAAAT
CCTGACTAAGACAGCAGAGAAACCCAAATGTCAGGACATACAATAATACA
GGAAACACAAAGCAACTGGTGGAGATTCAAACGTTTTATTAATTTTTAAA
CACCCCCCACTTTTTGAGAACATAATATATATTTTCTCCTTTTATTTCCT
TCCTCCTAACCCTCTGCTATCATACACATTATACATACATATATATGAAA
ATTTTATATACATACATATATAAATGATAAAACACACTCAAAGACACACA
CACACACACACACACAGACACGCACAGATATCTCTCAAAAGGACCAAGGT
CTGATCAAGTAAGTAAATACCTGTGTATTTTACTCTTGTAAGTGTAAAAT
TAATTGTGTAGTTAAACAATGGAATTTCACTACGTTTAAGAACAATGAGA
CAACTAACACTCTCAGTTATGTGCCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f01.b1 MSMg01no170_f01.b1 CHROMAT_FILE:
MSMg01no170_f01.b1 PHD_FILE: MSMg01no170_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:14 2005
         (320 letters)



>mm_chr16_51191851_51192570
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaaaaacaaaccaattattaagaaacaagagtcacctacaatgcccttccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaaaaacaaaccaattattaagaaacaagagtcacctacaatgcccttccc 264

                                                                       
Query: 65  tgccagataaaggataggaagctcatgctaaatgtcacaatagcaaataaagtcctaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccagataaaggataggaagctcatgctaaatgtcacaatagcaaataaagtcctaaat 324

                                                                       
Query: 125 caggagatccacttggctttttcacttagccctctaaattattagttttattgctggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggagatccacttggctttttcacttagccctctaaattattagttttattgctggcca 384

                                                                       
Query: 185 taaaattatttagctcatcttgaaattcagttacaaaatagactctgttgacctcttgta 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 taaaattatttagctcatcttgaaattcagttacaaaatagactttgttgacctcttgta 444

                                                                       
Query: 245 attataacagtttatatcaacatgtgacacaatgtcagttatttgactcaggtttatgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attataacagtttatatcaacatgtgacacaatgtcagttatttgactcaggtttatgaa 504

                           
Query: 305 aacagtggttacactg 320
           ||||||||||||||||
Sbjct: 505 aacagtggttacactg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)