BAC Information

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BAC

Clone NameMSMg01-170I23
Chromosome16 (Build37)
Map Location 74,842,090 - 74,928,357
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I23.T7 (MSMg01no170_i23.b1)MSMg01-170I23.TJ (MSMg01no170_i23.g1)
ACCAG367086AG367087
length718743
length of high quality
(start - end)
323 (50 - 372)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no170_i23.b1 PHD_FILE: MSMg01no170_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:33 2005CHROMAT_FILE: MSMg01no170_i23.g1 PHD_FILE: MSMg01no170_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,928,042 - 74,928,357)(74,842,090 - 74,842,380)
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTCATGTTGTCATAGGTTTGTAAATTGATGTTGGCTCTA
AGGCTTTCTAAAATGTTAACACTCAAATCAGGTCTCAACATTAGTATGTA
TTAGTTTAAGTAGACTGCTTTCTTCATTCCATATAAATTATGTCACCTGC
ACTGAGTAAATGGAAATTATAATTGCTTAAGAAAAAAGGCAAAGCGATAT
GGAATTGTATGGAGAAATTATTTTGAAATTGAATTTTCTTTAGGGAGTGC
AGGGCTAAGTAAAAAGAATCATTGTGTTGGCATGTTAGGTCTGTAAGAAG
GCACTGAGACTGTGAATCATATTTATATCACACATCTCTGCTCCAATTCA
AGGTGTTTAGACACGACATTGCTATAATAACTCAGTGATAGATCTCTCTA
TGTTACTATAACTTATCATAAATGGACAAGTTTACAAATGAGGGAGGAGA
CCACACATGAAAGGGAGGTGATACTCTAGCATCTAGGAAGGAGATGTGAA
AAAGTAGTTCCCAAGGTTGTATGGACAAACTCCAGAAATTCATAGGCATA
CAAGTTTTTGTATGATGGCCTAGTGCTGAACAGAAAACATATGCGTGGAT
TTCAGCTATCTGTGCTTGAATAAAATCCTCCAATCGGCTGATTCAGACAT
TAGTTCATGTTTGAGAGC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCACCTTTAAAATCCAAATCATTT
CTCAATGAATGAACCCTCTGGCTGGGACCCAATTCCCTCATTCATGATCC
TTTTGTACACTAGTTTTTGTGACTTCAGAATCTCAATTTCTGAAAGGAAT
CCAGAACTCAAAGATACATAATTGATGGAAGATTGGGGGCTGTGGCCAAA
GTTCAGTGAGATACCAATCATCCTATAACCATGTCACATTCTTATCTTTT
CTGTTGAAGATAATGGATTCCCCTATTATAAAGATGAGATTTATACAAAG
TGTTTTTGGGGAGGTATTGCATTGTTAACCCCCAACANGACGCAAGCAAT
TTGGAGAAAGGAATAAACTCTGTCAAATCGCAGGCTAGAAAAAATAGAAG
AAAGACGTAGGATTTATTTAAAATTGCATAAATGATTAACGGAATCATTA
CAGTATGGTTGTGATAATAGAGGAAAAGCGTATTTAAACAGAATATGTTC
TATGAGGTGTGCAATATATTAGGATTTCACATACACTTAGAAATAAAGGC
CAGAGCCTCCAGTAAAGTTTGTTGAAAACAGCTTTTTAGTGTACACCAGA
AATAGGAATGATGTCACATACATACTCTACAACATACTTTACAGAATGTT
AGAGAAAGTGGAGGGTGGATCAAGTAGGATATACTGACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i23.b1 MSMg01no170_i23.b1 CHROMAT_FILE:
MSMg01no170_i23.b1 PHD_FILE: MSMg01no170_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:33 2005
         (323 letters)



>mm_chr16_74927838_74928560
          Length = 723

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcatgttgtcataggtttgtaaattgatgttggctctaaggctttctaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcacttcatgttgtcataggtttgtaaattgatgttggctctaaggctttctaaaa 461

                                                                       
Query: 65  tgttaacactcaaatcaggtctcaacattagtatgtattagtttaagtagactgctttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgttaacactcaaatcaggtctcaacattagtatgtattagtttaagtagactgctttct 401

                                                                       
Query: 125 tcattccatataaattatgtcacctgcactgagtaaatggaaattataattgcttaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcattccatataaattatgtcacctgcactgagtaaatggaaattataattgcttaagaa 341

                                                                       
Query: 185 aaaaggcaaagcgatatggaattgtatggagaaattattttgaaattgaattttctttag 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaaaggcaaagcgatatggaattatatggagaaattattttgaaattgaattttctttag 281

                                                                       
Query: 245 ggagtgcagggctaagtaaaaagaatcattgtgttggcatgttaggtctgtaagaaggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggagtgcagggctaagtaaaaagaatcattgtgttggcatgttaggtctgtaagaaggca 221

                           
Query: 305 ctgagactgtgaatca 320
           ||||||||||||||||
Sbjct: 220 ctgagactgtgaatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_i23.g1 MSMg01no170_i23.g1 CHROMAT_FILE:
MSMg01no170_i23.g1 PHD_FILE: MSMg01no170_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:33 2005
         (293 letters)



>mm_chr16_74841890_74842582
          Length = 693

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcacctttaaaatccaaatcatttctcaatgaatgaaccctctggctgggacccaattc 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 201 agcacctttaaaatccaaatcatttctcaatgactgaaccctctggctgggaaccaattc 260

                                                                       
Query: 61  cctcattcatgatccttttgtacactagtttttgtgacttcagaatctcaatttctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcattcatgatccttttgtacactagtttttgtgacttcagaatctcaatttctgaaa 320

                                                                       
Query: 121 ggaatccagaactcaaagatacataattgatggaagattgggggctgtggccaaagttca 180
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggaaaccagaactcaaagatacataattgatggaagattgggggttgtggccaaagttca 380

                                                                       
Query: 181 gtgagataccaatcatcctataaccatgtcacattcttatcttttctgttgaagataatg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagataccaatcatcctataaccacgtcacattcttatcttttctgttgaagataatg 440

                                                              
Query: 241 gattcccctattataaagatgagatttatacaaagtgtttttggggaggta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattcccctattataaagatgagatttatacaaagtgtttttggggaggta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)