BAC Information

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BAC

Clone NameMSMg01-171A10
Chromosome16 (Build37)
Map Location 37,292,508 - 37,292,798
singlet/doubletsinglet
Overlap geneStxbp5l
Upstream geneEG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171A10.T7 (MSMg01no171_a10.b1)MSMg01-171A10.TJ (MSMg01no171_a10.g1)
ACCAG367401AG367402
length730782
length of high quality
(start - end)
315 (46 - 360)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no171_a10.b1 PHD_FILE: MSMg01no171_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:08 2005CHROMAT_FILE: MSMg01no171_a10.g1 PHD_FILE: MSMg01no171_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGAGACAGGAAAAATTTTTCTGAAGAGAACATCAATAGCACAG
GGTCTAAGAAAAATTAATAAATGAGACCTCATGAAACTGAAAAACTTGTT
ACTGCAAAGGACACCAATCACTAGGGCAGAGTGGTCAACGACAGAATGGG
AAGAGATTTTTTTTACCAACTATATATCTAATAGAAGGCTAATATCTAAC
ATGTATAAAAATCTTTAAAAGCTGGACATCAAGAAAACAAATAACTGAAA
TAAAAATGGAGTATAGATCTAAATAGAGAATTCTCAAAAGTGGAAATCAA
AATGGCTGATATTTACTTACCCCCCCGCCCAGCATCCTTAGCCATCAGGG
AAATGCACATCAATGCTATGTTCAACTTACATCATACATCTGTCAGAATG
ACTAAGATCAATAAAACAAATGATAGCTCATACTGGCAAGGATGTAGAAC
AAGTGGAATGAACACTTATCCATTGTGGTGGAAGTGTGAACTAGTACAGC
TACTATGGAAATCAATGTGGCAGTTCCTCAGGAAGCTGAGAGTACATCTA
CCTCAACATCCAGCTATACCACTTTTGGGTATAGAGCCAAAGGATACTTC
TTCATCCTACAACAGAAAAAATTGCTCATCCATATTTATTGCTGCTCTAC
TCATAATAGCCACAAATTAGAAACCACCTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATTAGAGAGACTAATTACAATGT
TAGTAGATGAATCATTGAATTTATTATTTCATACGCAGTAGTCCTCATGT
CTCTAGATATTGAACAGGTCTCAGAGCTGGCCAGAAAGCCCATTATGAAG
ATGAAGATAGAATGCTGAAACTCAAGGAAGTCTTGATATGGTGGCACATG
TCTGTGATTCCAGCACTCCTATGTTAAGATGGGAGGGTAGAGACAAGAGA
AGGGAAAAGAAGGATAGCTAGCCTGAAGTATGCAGTACTATGGCAAGTAA
GAGAAATGCTGCCTTATGTGTTTTGTTCCCACCCCCCCACCACCTGAGAT
TGTCCTCTGACCTCTACATTCCCACACACTCACACAAAAAAACACACTCA
CACGCGCGTCGCTCACAGAGAGAGAGATAGATTGATAGAGAGAGAGAGAG
AGAGAGAGAGAGAGACACANCATAATATATTATTCATTTTATTTTTTAAT
CATCATTATTCATTCCTCCCCCACCCCCACTTTTTTTTTTTTTTCTTCTA
TTTTTTTATATCTCCTCTATGTGCACTCGCTAACTTCTCTTTTTTTTCTT
TGTCCCCTCCCCCCCCCCATCTTTTCTATCTTTTTTTTTTTTTCCTTTTG
TGTGTCGTCCCGCATATTTTTATGCTTATTCTTCATTATTCTGAACTTAT
TGATATATTTTTTTCTTTTAATTCTCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_a10.g1 MSMg01no171_a10.g1 CHROMAT_FILE:
MSMg01no171_a10.g1 PHD_FILE: MSMg01no171_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:09 2005
         (292 letters)



>mm_chr16_37292308_37292999
          Length = 692

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattagagagactaattacaatgttagtagatgaatcattgaatttattatttcatacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 491 aaattagagagactaattacaatgttagtagatgaatcattgaatttattatttcataca 432

                                                                       
Query: 61  cagtagtcctcatgtctctagatattgaacaggtctcagagctggccagaaagcccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cagtagtcctcatgtctctagatattgaacaggtctcagagctggccagaaagcccatta 372

                                                                       
Query: 121 tgaagatgaagatagaatgctgaaactcaaggaagtcttgatatggtggcacatgtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgaagatgaagatagaatgctgaaactcaaggaagtcttgatatggtggcacatgtctgt 312

                                                                       
Query: 181 gattccagcactcctatgttaagatgggagggtagagacaagagaagggaaaagaaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gattccagcactcctatgttaagatgggagggtagagacaagagaagggaaaagaaggat 252

                                                              
Query: 241 agctagcctgaagtatgcagtactatggcaagtaagagaaatgctgcctta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agctagcctgaagtatgcagtactatggcaagtaagagaaatgctgcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)