BAC Information

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BAC

Clone NameMSMg01-171D04
Chromosome16 (Build37)
Map Location 85,283,078 - 85,283,359
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D04.T7 (MSMg01no171_d04.b1)MSMg01-171D04.TJ (MSMg01no171_d04.g1)
ACCAG367516AG367517
length729725
length of high quality
(start - end)
683 (47 - 729)283 (81 - 363)
definitionCHROMAT_FILE: MSMg01no171_d04.b1 PHD_FILE: MSMg01no171_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:22 2005CHROMAT_FILE: MSMg01no171_d04.g1 PHD_FILE: MSMg01no171_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGAGGAATACCAAAGGGCTGAGAAGCACCTGAAAAAATG
TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACAGCAG
ATGCTGGTGAGGATGTGAAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAAATATTCCAACTGGCAACAAGGACACATGCTCCACTATGT
TCATTGCAGCCCTATTTATAATAGCCAGAAGTTGGAAAGAACCCAGGTAC
CCCTCAACAGAGGAATGGTTACAGAAAATGTGGTACATTTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAG
AACTCACATGATGTGTACTCAATGATAAGTGCATATTAGCCCAGAAACTT
AGAATACCCAAGATACAAGATCCAATTTGCAAAACACATGAAACTCAAGA
AGAAGGAAGACCAAAGTGTGGACACCTTG
NATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGGTAAAAATGACACCA
CTGAGAGACAGAAAAAACTGAAGAGGACCAGGAGAGTTGCCCATAATAAA
ACATCTTAAATGTGTAGTTGTATGTCATCAGAATCCAGAAGAAAGAATTT
TGGGGATGCAAACAAATACTTGATTAAATATTTGTAAATCTTCAAATTTT
ATAATTTCTTTATAGTCCTTAGATTCATAAAACTCAGAGTAACTTAGATA
AGATGAACACAAAGAGCCTTGTACTTAGTTCTAGGGTCTGAGTATGTGCC
ACACATTTGATGTTTTGTTAAATTCGCCCCTCACCGATGTTGAGCATTAA
GCCCCAATGAGAGGTGAGGACTCTGCCCTCTTGAGTGGACTAATGCCGTA
ATCTGAGAGTAACATCAGTGATTACGGTGGTTTGCATATATTTGAATGTT
TAGATTCCAATTGGTGGACTGTTTTAGGAAGGGTTAGGAGGGCTGGCATT
GTTGCGGGAAGTGTGTCACATAGAGTAGACTTTGAGGTTTCAAAGCCCAC
ACCAGGCCCAGTCTTACTGTCTCTCTGCTTCCTGTCTTTAGATCACTATA
TAAACTCTCAGCTATGCTCAAGAGCCATGCCTGCCTGCCTGCATGTTGCC
TTGCTCCCTTCCATGATGATTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d04.g1 MSMg01no171_d04.g1 CHROMAT_FILE:
MSMg01no171_d04.g1 PHD_FILE: MSMg01no171_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:22 2005
         (283 letters)



>mm_chr16_85282878_85283560
          Length = 683

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagggtaaaaatgacaccactgagagacagaaaaaactgaagaggaccaggagagttgc 60
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| 
Sbjct: 201 taagggtaaaaatgacaccactgagagaaagaagaaactgaagaggaccaggagagttga 260

                                                                       
Query: 61  ccataataaaacatcttaaatgtgtagttgtatgtcatcagaatccagaagaaagaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccataataaaacatcttaaatgtgtagttgtatgtcatcagaatccagaagaaagaattt 320

                                                                       
Query: 121 tggggatgcaaacaaatacttgattaaatatttgtaaatcttcaaattttataatttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggatgcaaacaaatacttgattaaatatttgtaaatcttcaaattttataatttctt 380

                                                                       
Query: 181 tatagtccttagattcataaaactcagagtaacttagataagatgaacacaaagagcctt 240
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 381 tatagtccttagattcataaaactcagagtaacttagataagattaacacaaagagactt 440

                                                     
Query: 241 gtacttagttctagggtctgagtatgtgccacacatttgatg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacttagttctagggtctgagtatgtgccacacatttgatg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)