Query= MSMg01no173_a17.b1 MSMg01no173_a17.b1 CHROMAT_FILE:
MSMg01no173_a17.b1 PHD_FILE: MSMg01no173_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:38 2005
(541 letters)
>mm_chr16_77360458_77361397
Length = 940
Score = 969 bits (501), Expect = 0.0
Identities = 531/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 1 gtgtgatgcctgcaggtcagagttgaggctgtgggcaggcaggtgggagcccaactccta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gtgtgatgcctgcaggtcagagttgaggctgtgggcaggcaggtgggaggggaactccta 260
Query: 61 gtctgaaatgtgtgaaatgcattactaacagagggtaagcagtattcataataactagtg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gtctgaaatgtgtgaaatgcattactaacagagggtaggcagtattcataataactagtg 320
Query: 121 ccatgacactgaatacatctttatagaaatctgaaatgagaatattaaaaattatgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgacactgaatacatctttatagaaatctgaaatgagaatattaaaaattatgaaat 380
Query: 181 tagttcatgaaagagacaattacagaaattatactgtactgatcccccctccatctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttcatgaaagagacaattacagaaattatactgtactgatcccccctccatctctct 440
Query: 241 cctatcttatatcttcaggaatgtaactgggataattgtccaaatcgaatcccatgccct 300
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 441 cctatcttagatcttcaggaatgtaactgggataattgtccaaattgaatcccataccct 500
Query: 301 gtcatgctgagtagaaccatctaagatgctatttttttcgtgtttatctgtaattttttt 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatggtgagtagaaccatctaagatgctatttttttcgtgtttatctgtaattttttt 560
Query: 361 tcattggtaatctcagttttctggtgattggtataggaaattcaaagaactgatttccat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -cattggtaatctcagttttctggtgattggtataggaaattcaaagaactgatttccat 619
Query: 421 gttttaattctctttgtgatggaaaggtgaatatttggctaggaatgcagctcagtggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttttaattctctttgtgatggaaaggtgaatatttggctaggaatgcagctcagtggct 679
Query: 481 actgtgactgactggcatccgtgaggccctgactctgcctagcgccacatacacctggtg 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actgtgactgactggcatctgtgaggccctgactctgcctagcgccacatacacctggtg 739
Query: 541 t 541
|
Sbjct: 740 t 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space: 493830
Effective search space used: 493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_a17.g1 MSMg01no173_a17.g1 CHROMAT_FILE:
MSMg01no173_a17.g1 PHD_FILE: MSMg01no173_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:38 2005
(612 letters)
>mm_chr16_77515785_77516796
Length = 1012
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%)
Strand = Plus / Minus
Query: 24 ttcatgaattatactggattttctacggctatttttatagtagttgtatgaaaataaaaa 83
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 755 ttcatgaattatactggattttctagggctatttttatagtagctgtatgaaaataaaaa 696
Query: 84 ataaataagtagatgtttaaaataaaaattagaaatcaactccaattaaaatatcttaga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ataaataagtagatgtttaaaataaaaattagaaatcaactccaattaaaatatcttaga 636
Query: 144 aggctgaaaagtagagttaatggcctagtgatctgtgtatctgttggaccaggccatatg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aggctgaaaagtagagttaatggcctagtgatctgtgtatctgttggaccaggccatatg 576
Query: 204 gagcttcaacagtaggtactagagataaataatagtcaaattgatccttacattacctgt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagcttcaacagtaggtactagagataaataatagtcaaattgatccttacattacctgt 516
Query: 264 ataggttcctgtacacaacaacaatagaagtagctaatagaccaaactaactctatgaca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ataggttcctgtacacaacaacaatagaagtagctaatagaccaaactaactctatgaca 456
Query: 324 tatatcaggccagatctgtccctaggcccttaaactaaagcaggtagcctatctccagaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatatcaggccagatctgtccctaggcccttaaactaaagcaggtagcctatctccagaa 396
Query: 384 atcctcttcttagaagaaatgatatatatcctgagtcgagtttccatgtaattatgcttt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atcctcttcttagaagaaatgatatatatcctgagtcgagtttccatgtaattatgcttt 336
Query: 444 ctttgttaactggtgattatattctactgggaaattttttcccaaattatattgtgttta 503
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctttgttagctggtgattatattctactgggaaattttttcccaaattatattgtgttta 276
Query: 504 aatatgttgtaataaaccacataggatcagactcccaaagattgacccagcctaaatcgg 563
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 275 aatatgttgtaataaaccacataggatcagactcccaaagtttgacccagcctaaatcgg 216
Query: 564 gatggacttattctcacttctttctggaatgtttccctgcctgccatga 612
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gatggacttattctcacttctttctggaatgtttccctgcctgccatga 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
