Query= MSMg01no173_a23.b1 MSMg01no173_a23.b1 CHROMAT_FILE:
MSMg01no173_a23.b1 PHD_FILE: MSMg01no173_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:39 2005
(284 letters)
>mm_chr16_63801407_63802090
Length = 684
Score = 408 bits (211), Expect = e-118
Identities = 253/281 (90%), Gaps = 24/281 (8%)
Strand = Plus / Plus
Query: 1 attggaaatatttagagaaaattaatgatttgagctctctctctctctctccctctctct 60
|||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 225 attggaaatatttagagaaaattaatgatttgag-t-----------------tctctct 266
Query: 61 ctctctctctctctctctctctctctctcacacacacacacacacacacacacacaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 267 ctctctctctctctctctctctctctctcacacacacacacacacacacac------cac 320
Query: 121 attcctttagtctatgatacttgtcatccaatattctagttttttaaattagtcattctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcctttagtctatgatacttgtcatccaatattctagttttttaaattagtcattctt 380
Query: 181 ccatatgaaaaagaacagtatgagtgtatatgtgttactcaagttgtgtatgttggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatatgaaaaagaacagtatgagtgtatatgtgttactcaagttgtgtatgttggttta 440
Query: 241 tgtgtttgtttttgtatacccttctgaaacctaagggaaat 281
|||||||||| || ||||||||||||||||||| ||||||
Sbjct: 441 tgtgtttgttgctgcatacccttctgaaacctaaaggaaat 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no173_a23.g1 MSMg01no173_a23.g1 CHROMAT_FILE:
MSMg01no173_a23.g1 PHD_FILE: MSMg01no173_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:39 2005
(575 letters)
>mm_chr16_63923287_63924261
Length = 975
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%)
Strand = Plus / Minus
Query: 1 tggctacttttaggcttgggtcaaaataaaagaattcccctgcttttgtcttggtgggta 60
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 775 tggctacttttaggcttgggtcaaaatcaaagaattcccctgcttttgtattggtgggta 716
Query: 61 tgcaagtccattacaccaactaatcacccacttgacatccagagcctatagtaaaatgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgcaagtccattacaccaactaatcacccacttgacatccagagcctatagtaaaatgcc 656
Query: 121 cctcccatacatgtcctcatctggtttgtattatttttttctttattttcctatgaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctcccatacatgtcctcatctggtttgtattatttttttctttattttcctatgaataa 596
Query: 181 agaaatcaaagacaaacaatctaaaataaatcagagtcgttatttccatccattctaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agaaatcaaagacaaacaatctaaaataaatcagagtcgttatttccatccattctaatg 536
Query: 241 cagaatgcatctttgagtcttggcctcattcacacctatcatgagccacattgttgcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cagaatgcatctttgagtcttggcctcattcacacctatcatgagccacattgttgcaat 476
Query: 301 attttcatgaagccgaaggtaccaatgtcaactatagaaaataaaataaagcaaggacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 attttcatgaagccgaaggtaccaatgtcaactatagaaaataaaataaagcaaggacta 416
Query: 361 gaaaaagaggtgcagacagaatgatggaattctatacctgccaagagtcagattgtggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaaaaagaggtgcagacagaatgatggaattctatacctgccaagagtcagattgtggag 356
Query: 421 ggcttctcaattttcctcctggcatttacactgccatgacaaatgaggggctctgcaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggcttctcaattttcctcctggcatttacactgccatgacaaatgaggggctctgcaaag 296
Query: 481 accaaaaggatgaagcgagcacacagagaaatagagacaggagtcattaggaggcagagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 accaaaaggatgaagcgagcacacagagaaatagagacaggagtcattaggaggcagagc 236
Query: 541 atggtatattcaggggaaggtcacgaggcagaaaa 575
|||||||||||||||||||||||||||||||||||
Sbjct: 235 atggtatattcaggggaaggtcacgaggcagaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
