BAC Information

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BAC

Clone NameMSMg01-173O18
Chromosome16 (Build37)
Map Location 4,054,862 - 4,055,143
singlet/doubletsinglet
Overlap geneTrap1
Upstream geneLOC100042177, LOC100042915, LOC100042188, LOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1
Downstream geneCrebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173O18.T7 (MSMg01no173_o18.b1)MSMg01-173O18.TJ (MSMg01no173_o18.g1)
ACCAG369383AG369384
length737715
length of high quality
(start - end)
---284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no173_o18.b1 PHD_FILE: MSMg01no173_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:40 2005CHROMAT_FILE: MSMg01no173_o18.g1 PHD_FILE: MSMg01no173_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTATAANNCCTTTTTATTTGATCGGCTGTCCACCTGGACTTNNTATC
TATAATTGGGCGCTAAAGACTACTATTTCCGAGGGCGGNGGNATTATTAT
GTTGCGAGAGGGGGGGGGGGNGTGAGNCGAGGAGGTAGACCTGTATATTT
TGCGCCGATGGGGTGGGGGAGTGTGGTGATAGTGTCGTGGGAGGGTGGTA
TCGCTGAGAGTCGGAGAGAGTAGGTCGGAATATAAGGGTATTGGTGGAGT
GCTGTGGTGTTCTTTTCATATTAGTTGCGTGGCGATGCTGTTTCTTTTAG
TGGGGAAACTGTGGTGGAGTTTTTTTTTGATCTGTGAGGCGCGGGGAAGG
CGGGTTTTTTTTTTTTCCTCCTCCCTTCCTGGATGTTGAGTGCTGCGGTC
GGTCGTTTGTTTGCAGAAAAAAAAAAAAAAATCAGGGGGGGGGGGGGGTT
TGGTTATATGTATAATTAGGGGATTAGGTTAGTGAGGATTTGTGGAGGGA
AGGGTAGTAGAAGTATTGTTATCGTTGATTTTTTTGCGTTGCTGGTGTTT
TTTCGTGGGGCTTTGGTGGTGTGTGATCAGGGTTGCTTGTTTTTATAATA
TTATACGTTATAGAGTTTATGTATGTGTTAATGTGCTATGGAGTAGTGTT
GGTATGGGGTTTGCATTTATTTTTGTGTTCGTTGTGTTCAATAGTTATGA
GTATGTAGGGTGTGTTTAGGGGGATTGTTTTTTCCTC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATGCTGAAATTCACTGATGTC
CTTTGGGTCCATCATCCAGATGGCCTGGAAATTTATATCAAAGGGGGTAT
CATGTTAGAAACATGTTTCTCAATGACTGCACAGGACCCAGACTCATGGA
CAGACCAGCAGGGACTAGCCTAGGAAGACCCCCACATTGACAGCTTCAGC
ATTGGTGTAGGTTGAAAGTGATACAAAAGAGAGATGCAGGGGCTGGCGAG
ATGGCTCAGTGGTTAAGAGCACCGACTGTTCTTCCAAAGGTCCGGAGTTC
AAATCCCAGTTTTTTTTTGTTGCCCCACCACCCTCTGTAACGAAATCTGA
TGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAAT
AAATAAATAAATCTTTAAAAAAAAAAGAGAGATGCAAAGGCTCTGAAGCA
AGAGCCTCTCTGTGTGACAGCAGGTTGGGAAGGACTAACTAGGGGACCAC
ACAAGAGTGTACTTAGCAGAGATAAGGACATTATCCAATAGGCAAGCCTG
TAATCTATCCATGAAATGGATAGTCATAAAAAGGAACAAGACTATGCCTG
ATACAATGTAACTCCCAAATTAGGCAAATCTACAGACAGAGAAAGAGTTG
ACTGTAGTTGTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_o18.g1 MSMg01no173_o18.g1 CHROMAT_FILE:
MSMg01no173_o18.g1 PHD_FILE: MSMg01no173_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:40 2005
         (284 letters)



>mm_chr16_4054662_4055344
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatgctgaaattcactgatgtcctttgggtccatcatccagatggcctggaaatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgctgaaattcactgatgtcctttgggtccatcatccagatggcctggaaatttat 260

                                                                       
Query: 61  atcaaagggggtatcatgttagaaacatgtttctcaatgactgcacaggacccagactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaaagggggtatcatgttagaaacatgtttctcaatgactgcacaggacccagactca 320

                                                                       
Query: 121 tggacagaccagcagggactagcctaggaagacccccacattgacagcttcagcattggt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tggacagaccagcagggactagcctaggaagacccc-acattgacagcttcagcattggt 379

                                                                       
Query: 181 gtaggttgaaagtgatacaaaagagagatgcaggggctggcgagatggctcagtggttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaggttgaaagtgatacaaaagagagatgcaggggctggcgagatggctcagtggttaa 439

                                                      
Query: 241 gagcaccgactgttcttccaaaggtccggagttcaaatcccag 283
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 gagcaccgactgctcttccaaaggtccggagttcaaatcccag 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)