BAC Information

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BAC

Clone NameMSMg01-174H18
Chromosome16 (Build37)
Map Location 53,722,458 - 53,870,252
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H18.T7 (MSMg01no174_h18.b1)MSMg01-174H18.TJ (MSMg01no174_h18.g1)
ACCAG369770AG369771
length740740
length of high quality
(start - end)		320 (42 - 361)303 (73 - 375)
definitionCHROMAT_FILE: MSMg01no174_h18.b1 PHD_FILE: MSMg01no174_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:21 2005CHROMAT_FILE: MSMg01no174_h18.g1 PHD_FILE: MSMg01no174_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,869,938 - 53,870,252)(53,722,458 - 53,722,760)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAATATAGATGTCAAGAAAGCATCTGGATAAAATCATCTCAATTCTAAA
AGATTAGATGGATGATGATACTTTTGGAATGTATGTAATTTATTTGTATA
TAGTTTATATACTATATACAATTTTAGTAAAAATCTGAAAGAGAAGGAGT
TCAAGAAACAAACATTTGGAAGGTTTTAGTATTTAATATAAATAATGCCA
AGACTGATGAGCAATAATTATTAAGCAGTAGGAATTTGAGTTTAATATCA
GACCTGCACATTGCTATGGAAATAAAGGAAAGTGATTTTAAAATGACGAC
AGGTTGTTTCTTTTTAAGTTGAACCCCACCCATTAAAATAAAAGTCATTT
CCAAAACATAGAAAACGCTGTGAAGAAAGGAAAGGTGATAACATAACAGA
GTAAATTGCTGGCAGGGATATGAGACAGTACACATAACTCTTCTGAAAAC
ATGTCATTGATAAAAGGAGTAGCTAAAATGGGATTATTTTGAATTAGCAT
TTGAATTTTTTAAATGTTTTTAATATAAGTAGAAAGTTTAAGTGTTTAGA
TAATTTCTGTTATAAAAGAATGAAGTTGAATGTTGTAACTGTTAAGTAGC
ACTTCCTAGATATATTATGTAACTACTTAGTTCATTCTGACTTTANAATT
GTTTTCCTGTTTATTTGATATTTAAAATTGATTACAAAGA

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCTCAAGTTCATGGCTTTTTTTGTA
AGACTGAATCTCCAGATTTCTACTTTTCCTGCTTATAGGTTTGCTTTTAC
TTCAATAATGTCACCTTTTCTCCAAACTAAATGTAATTATGCTGTTAATC
CAGTGTTTATAAACGCTTTCCCCCGAGGCATGTAACCCATGAATCACAGG
TTACAGTGCAGACCATGGTGAGAAACCATCTGCTCAGACGAACATTTATT
ATAAGGGTTATAAAAGTCTGCGTTTATTATGCATGAGATTCTGAATAATT
TAGGTGGGTTTCATATAAATTCTTACCCGTAAAGCAACTAAAACACTAGT
CTGAGGAAGAAATGACAAAACTATTATTATATACAAATACTTAATTCAGA
ATAAACATCAAAGCAAGGCTCTGGATGATTTTCTAGGATGACTTTAACCA
GTGAGTTTTTCTTTTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAGC
TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACTCATCC
CCACTCTTCTACTCTCTCACTCTCCCTTTTTGACCCATATGTTCCCCTGT
ACTGTTTCACATTTATAAGCACAAAACTTCTAAAATCCACTTAATCCCAT
GTAATTGCTCTTTATTTAAAGAATATATGCCTCTACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h18.b1 MSMg01no174_h18.b1 CHROMAT_FILE:
MSMg01no174_h18.b1 PHD_FILE: MSMg01no174_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:21 2005
         (320 letters)



>mm_chr16_53869735_53870454
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaatatagatgtcaagaaagcatctggataaaatcatctcaattctaaaagat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctaatatagatgtcaagaaagcatctggataaaatcatctcaattctaaaagat 459

                                                                       
Query: 64  tagatggatgatgatacttttggaatgtatgtaatttatttgtatatagtttatatacta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tagatggatgatgatacttttggaatgtatgtaatttatttgtatatagtttatatacta 399

                                                                       
Query: 124 tatacaattttagtaaaaatctgaaagagaaggagttcaagaaacaaacatttggaaggt 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 398 tatacaattttagtaaaaatctgaaagagacggagttcaagaaacaaacatttggaaggt 339

                                                                       
Query: 184 tttagtatttaatataaataatgccaagactgatgagcaataattattaagcagtaggaa 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttagtatttaatataactaatgccaagactgatgagcaataattattaagcagtaggaa 279

                                                                       
Query: 244 tttgagtttaatatcagacctgcacattgctatggaaataaaggaaagtgattttaaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttgagtttaatatcagacctgcacattgctatggaaataaaggaaagtgattttaaaat 219

                          
Query: 304 gacgacaggttgttt 318
           |||||||||||||||
Sbjct: 218 gacgacaggttgttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no174_h18.g1 MSMg01no174_h18.g1 CHROMAT_FILE:
MSMg01no174_h18.g1 PHD_FILE: MSMg01no174_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:22 2005
         (303 letters)



>mm_chr16_53722258_53722960
          Length = 703

 Score =  540 bits (279), Expect = e-158
 Identities = 297/303 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctcaagttcatggctttttttgtaagactgaatctccagatttctacttttcctgc 60
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctcaatttcatggctttttgtgtaagactgaatctccagatttctacttttcctgc 260

                                                                       
Query: 61  ttataggtttgcttttacttcaataatgtcaccttttctccaaactaaatgtaattatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttataggtttgcttttacttcaataatgtcaccttttctccaaactaaatgtaattatgc 320

                                                                       
Query: 121 tgttaatccagtgtttataaacgctttcccccgaggcatgtaacccatgaatcacaggtt 180
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tgttaatccagtgtttataaactctttcccccaaggcatgtaacccatgaatcacaggtt 380

                                                                       
Query: 181 acagtgcagaccatggtgagaaaccatctgctcagacgaacatttattataagggttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgcagaccatggtgagaaaccatctgctcagacgaacatttattataagggttata 440

                                                                       
Query: 241 aaagtctgcgtttattatgcatgagattctgaataatttaggtgggtttcatataaattc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 441 aaagtctgcgtttattatgcatgagattctgaataatttaggtgtgtttcagataaattc 500

              
Query: 301 tta 303
           |||
Sbjct: 501 tta 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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