BAC Information

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BAC

Clone NameMSMg01-174I09
Chromosome16 (Build37)
Map Location 56,184,149 - 56,184,454
singlet/doubletsinglet
Overlap geneSenp7
Upstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1
Downstream geneImpg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174I09.T7 (MSMg01no174_i09.b1)MSMg01-174I09.TJ (MSMg01no174_i09.g1)
ACCAG369796AG369797
length714739
length of high quality
(start - end)
310 (36 - 345)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no174_i09.b1 PHD_FILE: MSMg01no174_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005CHROMAT_FILE: MSMg01no174_i09.g1 PHD_FILE: MSMg01no174_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGATT
TGTAAAGTTAATTTCAGTATTCGAAACACTTTAAAGAATGAGTGGCTATC
AATGTATTTAAACTAGCTTAAATTGTAAGACAAAATTCATGTTATTTCAG
AGTACCGAGGTGAATATGTCAGTACCAAAGAAAATGTGTAAGCGGTAAGT
ACATATTCCAATGATAATACAAACTTTGAAAATTATATAGTTTTAAAGAT
TTATTTTATGTGTATGAGTGTTTTGCCTACATGTGCATATGAGTACCATA
TGTGTGCTATTTTTCACTGCAGAGGTCAGAAGAGGGTTTTGGATCCTNGG
GTACNGCCCTTAACGAAACCTGTGAGCTACAGTGTGGATACTGGGTACCT
AGCCCATATCTTAAAAAAAAGAAAGTGTTCTGAACCAAAGCTACAATATC
TGTCTTTCTATCTGTCTGTCTGTCTGTCCATCCATCCATCCATTTTAATA
AATGTGTGTTTGCTGACGCGCTTCATATTCCATGTTACATCCACATATAT
GAAGGTTTTAGGACAGCTTTTGGGAATCGGTTCTTTCCTTCTACCTAATA
TTGAAGTCTGGTCTTGACACTCACAACCACCCACCTGCTTAACTATCTCT
CCCGTCCTGTATGTCCTCTCTGTTTGTTTGTATTTCGGTATTCTTCTTTA
CGAATCCCCATATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTTCACCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGTCATATATCCCCACCCTCCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGAAGAACAAAAAAATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAG
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGTTATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAAGATACCCACGATATAAGATACAATTT
CCTAAACACATGAAACTCCCGAAAAATGAAGACTGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_i09.b1 MSMg01no174_i09.b1 CHROMAT_FILE:
MSMg01no174_i09.b1 PHD_FILE: MSMg01no174_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:24 2005
         (310 letters)



>mm_chr16_56183945_56184654
          Length = 710

 Score =  553 bits (286), Expect = e-162
 Identities = 301/310 (97%), Gaps = 8/310 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgatttgtaaagttaatttcagtattcgaaacactttaaagaatgagtggctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgatttgtaaagttaatttcagtattcgaaacactttaaagaatgagtggctat 264

                                                                       
Query: 65  caatgtatttaaactagcttaaattgtaagacaaaattcatgttatttcagagtaccgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgtatttaaactagcttaaattgtaagacaaaattcatgttatttcagagtaccgag 324

                                                                       
Query: 125 gtgaatatgtcagtaccaaagaaaatgtgtaagcggtaagtacatattccaatgataata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgaatatgtcagtaccaaagaaaatgtgtaagcggtaagtacatattccaatgataata 384

                                                                       
Query: 185 caaactttgaaaattatatagttttaaagatttattttatgtgtatgagtgttttgccta 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 caaactttgaaaattatatagttttaaagatttattttgtgtgtatgagtgttttgccta 444

                                                                       
Query: 245 catgtgcatatgagtaccatatgtgtgcta----tttttcactgcagaggtcagaagagg 300
           ||||||||||||||||||||||||||||||    |    |||||||||||||||||||||
Sbjct: 445 catgtgcatatgagtaccatatgtgtgctaggcat----cactgcagaggtcagaagagg 500

                     
Query: 301 gttttggatc 310
           ||||||||||
Sbjct: 501 gttttggatc 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)