BAC Information

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BAC

Clone NameMSMg01-175N11
Chromosome16 (Build37)
Map Location 33,484,442 - 33,485,086
singlet/doubletsinglet
Overlap geneZfp148
Upstream geneOsta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4
Downstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175N11.T7 (MSMg01no175_n11.b1)MSMg01-175N11.TJ (MSMg01no175_n11.g1)
ACCAG370713AG370714
length734720
length of high quality
(start - end)
314 (43 - 356)645 (76 - 720)
definitionCHROMAT_FILE: MSMg01no175_n11.b1 PHD_FILE: MSMg01no175_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:00 2005CHROMAT_FILE: MSMg01no175_n11.g1 PHD_FILE: MSMg01no175_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAATGATTTGAAGTAAGGAATGAAAGAAGTGCTACTACTGCCAGACTT
AAAGAAATAAAGAGGAGAACCGGGGACAGTTAATATATCCGTATTTCAGA
AAGTCGGGATAAAGTGGATAATTATGGGGAGGGACACAGCCTACCAACAT
TACACAAAACAGGAAATCAGGACACTCCTGTGCAGGGAGAAAATATGCTA
ATAATCAGAAAATGTAAACAAGTGCAACCAAGAAACCCAGGACCAGATGG
TGGCACTGATGTGTTCTACTTAGCATTTATAGAGTTAATGCTAACCGTTT
ATACACTCTTCTTTAGACTACACCCACAGGGGAACCCCCACCCCCACCAA
GTAAGTCCTCATAGCACTGTTAATGCCACACCAAAACCAGACAGAGGCAT
CTCACGGAAGCTGCAGGCCAGCATCCCTGGGAAGTGTGTGCCAACATCCT
CTCAGCAAAGTTGGAGCAGATGGAACCCAGAAACCAAGGTAAGAACCACA
GGGTAAGGCCCCTGGCAAGAGACTCCACCCAAAGGAGCTAAGACAGCCCA
GGACCCATCAGCACCGACTACAGGGACTGCCGACAGAGGCCCAGGCCCTG
AAACTTCTCAGCCATGGCCACCTGTGCTGGGCAAACCTTGTGAAGATGCT
TTCTGCTAGCCAGTCCAGCTAACAATAGCTGAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTACCCAGGAAACTATCCATCCAA
AGTGTGGATGGAGTAAAACTGTATTCAGATGAACAGAAACCAAGAACATT
TATTATCAGTGGTCCCACAATTTAAGAGCTATAAACATTCCTTAGATGGA
AAAAAAACGATCCCATATGAAAACAAGGAAGTAGGAGCAGCAACATGGTT
CAGCAGTAAAAGTTCCGGTTATGCAACCCTAATGGCCCGAGTTCTACCTC
TAGAACTGTGAAATAGCCAGACGTGGTGGTGAAATAGCCAGACATGGTGG
TGTGCATCGATAATCCCAGCATTTCTTACAGAAGGTAGAGATAGGAGATG
TGTGTGAAGTTCATGGGCTTGCTAGCCTGGAGTACAGAGCACAGCAATAA
AAATGAGAAAGACCCTGCCTTAACACAGTGGGGAGAGAGAAACAACTCCT
TCAAGTTGTCCTTTGGCCTCCACATGTACACCTTCTACATATACATCACA
CACACAGTGATGAAGAGAAGAGAAAAACATGGAGAGGCAGAGAAAGACAG
AAGAGTGGCAGGGACATCAAATATGTGGCTAAGGCAGATCTGTGTGAGTT
TGAGGCCAGCTACAGAGCAAGTTATATATAGGACAGCAAGAACTACATGG
ACCAAAGCAAAATGGGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_n11.g1 MSMg01no175_n11.g1 CHROMAT_FILE:
MSMg01no175_n11.g1 PHD_FILE: MSMg01no175_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:00 2005
         (645 letters)



>mm_chr16_33484242_33485286
          Length = 1045

 Score = 1193 bits (617), Expect = 0.0
 Identities = 638/645 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtacccaggaaactatccatccaaagtgtggatggagtaaaactgtattcagatgaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtacccaggaaactatccatccaaagtgtggatggagtaaaactgtattcagatgaaca 260

                                                                       
Query: 61  gaaaccaagaacatttattatcagtggtcccacaatttaagagctataaacattccttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaccaagaacatttattatcagtggtcccacaatttaagagctataaacattccttag 320

                                                                       
Query: 121 atggaaaaaaaacgatcccatatgaaaacaaggaagtaggagcagcaacatggttcagca 180
           |||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 atggaagaaaaatgatcccatatgaaaacaaggaagtaggaccagcaacatggttcagca 380

                                                                       
Query: 181 gtaaaagttccggttatgcaaccctaatggcccgagttctacctctagaactgtgaaata 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaaagttccggtcatgcaaccctaatggcccgagttctacctctagaactgtgaaata 440

                                                                       
Query: 241 gccagacgtggtggtgaaatagccagacatggtggtgtgcatcgataatcccagcatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccagacgtggtggtgaaatagccagacatggtggtgtgcatcgataatcccagcatttc 500

                                                                       
Query: 301 ttacagaaggtagagataggagatgtgtgtgaagttcatgggcttgctagcctggagtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacagaaggtagagataggagatgtgtgtgaagttcatgggcttgctagcctggagtac 560

                                                                       
Query: 361 agagcacagcaataaaaatgagaaagaccctgccttaacacagtggggagagagaaacaa 420
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagcacagcaatagaaacgagaaagaccctgccttaacacagtggggagagagaaacaa 620

                                                                       
Query: 421 ctccttcaagttgtcctttggcctccacatgtacaccttctacatatacatcacacacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccttcaagttgtcctttggcctccacatgtacaccttctacatatacatcacacacac 680

                                                                       
Query: 481 agtgatgaagagaagagaaaaacatggagaggcagagaaagacagaagagtggcagggac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgatgaagagaagagaaaaacatggagaggcagagaaagacagaagagtggcagggac 740

                                                                       
Query: 541 atcaaatatgtggctaaggcagatctgtgtgagtttgaggccagctacagagcaagttat 600
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcaaatatgtagctaaggcagatctgtgtgagtttgaggccagctacagagcaagttat 800

                                                        
Query: 601 atataggacagcaagaactacatggaccaaagcaaaatgggaaga 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atataggacagcaagaactacatggaccaaagcaaaatgggaaga 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)