Query= MSMg01no176_g02.b1 MSMg01no176_g02.b1 CHROMAT_FILE:
MSMg01no176_g02.b1 PHD_FILE: MSMg01no176_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:03 2005
(681 letters)
>mm_chr16_53971154_53972233
Length = 1080
Score = 1162 bits (601), Expect = 0.0
Identities = 661/683 (96%), Gaps = 8/683 (1%)
Strand = Plus / Minus
Query: 1 caagtgcaatgtttgcattgtcgtagaatctggggattgaactcagcttcttatacttgc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 957 caagtgcaatgtttgcattgtcatagaatctggggattgaactcagcttcttatacttgc 898
Query: 61 acaccagcatgttacctaggtacgtttctagtactgaaaaaaaaaaacctttttaatatt 120
||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 897 acaccagcatgttacctaggtacttttctagttctgaaaaaaaaa---ctttttaatatt 841
Query: 121 gctttcattttataatgataaaatgtttcaaagctgttgaaatttaaagaattaaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 840 gctttcattttataatgataaaatgtttcaaagctgttgaaatttaatgaattaaacaaa 781
Query: 181 tattgtaatgagctaagtcacaacttttttcattttgatgctaaagccattaaaatttaa 240
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 780 tattgtaatgagctaaatcacaacttttttaattttgatgctaaagccattaaaatttaa 721
Query: 241 agttaaatatatttaattttatatgcattctaatgattaatttttctcatctgtgtatct 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 720 agttaaatatatttaattttatatgcattctaatgattaatttttttcatctgtgtatct 661
Query: 301 aacctataattcaaattcttcatttgacagagtagtatatttcagacatatattttctcc 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 660 aacctataattcaaattcttcaattgacagagtagtatatttcagacatatattttctcc 601
Query: 361 accaagctataagttaacataaggaacaaaa-ca-aggatgataaaaagctaatgtgctt 418
|||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||
Sbjct: 600 accaagctataagttaacat-aggaacaaaaccaca--atgataaaaagctaatgtgctt 544
Query: 419 tgagctatcttttaccaattttatttttgggatattctgatatttgcaactccattttgt 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 543 tgagctatcttttaccaattttatttttgggattttctgatatttgcaactccattttgt 484
Query: 479 ttcattggttaatgtcttcttttattttattaattttatatattgttattgtgttcttgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttcattggttaatgtcttcttttattttattaattttatatattgttattgtgttcttgt 424
Query: 539 ttcttttcccttttttattggatattttatttgtttacatttcaaatgttattccctttc 598
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 423 ttcttttcccttttttattggacattttatttgtttacatttcaaatgttatcccctttc 364
Query: 599 atggttttccctccgcaaccccctatcacatccccctcccccagcttctatgagggtgct 658
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 363 atggttttccctccacaaccccctatcacatccccctccccctgcttctatgagggtgct 304
Query: 659 ctcccacacatccactcaggctt 681
||||||||| |||||||||||||
Sbjct: 303 ctcccacacgtccactcaggctt 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_g02.g1 MSMg01no176_g02.g1 CHROMAT_FILE:
MSMg01no176_g02.g1 PHD_FILE: MSMg01no176_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:03 2005
(331 letters)
>mm_chr16_53856871_53857597
Length = 727
Score = 605 bits (313), Expect = e-177
Identities = 325/331 (98%), Gaps = 4/331 (1%)
Strand = Plus / Plus
Query: 1 aaatacacagacacagattaaaagtatgtagagccttaaaactttgtgaaaaccctagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatacacagacacagattaaaagtatgtagagccttaaaactttgtgaaaaccctagct 260
Query: 61 tctttcctgcatcacaaaagttaaatgcctaaagcaatagttacctttataaaaaatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttcctgcatcacaaaagttaaatgcctaaagcaatagttacctttataaaaaatgta 320
Query: 121 ttacattgttttataaattctttgtcattaaaagattgccagttatatttttcagcacaa 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttacattgttttataaatt----gtcattaaaagattgccagttatatttttcagcccaa 376
Query: 181 aacactgttgattataagaaattactatgataatttaatcattgtaaataccctttgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aacactgttgattataagaaattactatgataatttaatcattgtaaataccctttgata 436
Query: 241 ttcctagtaattatcttagaacaggttcagaagaacaagtgatttgaacccttctctcaa 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 ttcctagtaattatcttagaacaggttcagaagaacaagtgagttgaacccttctctcaa 496
Query: 301 ccaagatacataatgcactatcagttgtgag 331
|||||||||||||||||||||||||||||||
Sbjct: 497 ccaagatacataatgcactatcagttgtgag 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 727
Length adjustment: 9
Effective length of query: 322
Effective length of database: 718
Effective search space: 231196
Effective search space used: 231196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
