BAC Information

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BAC

Clone NameMSMg01-177E24
Chromosome16 (Build37)
Map Location 35,915,087 - 35,915,371
singlet/doubletsinglet
Overlap geneLOC100043217
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133
Downstream geneDtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177E24.T7 (MSMg01no177_e24.b1)MSMg01-177E24.TJ (MSMg01no177_e24.g1)
ACCAG371736AG371737
length773715
length of high quality
(start - end)		39 (111 - 149)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no177_e24.b1 PHD_FILE: MSMg01no177_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:51 2005CHROMAT_FILE: MSMg01no177_e24.g1 PHD_FILE: MSMg01no177_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGATCCGC
GGAATTCAGGACCCCCGGAAAAGCAGTCAGTGCTCTCAACTACTGAGCCC
TCTCTCCCGCCCCAATTCCCACACATTTTTATATGATTTAGTTGTGTTTT
GTTGTTGTTGTTGNTGCGNNNANNNNNNNTTNNCCNTCTTTTNNNTGNNN
TTTTTTTTTTCTNTTNTTTTTTTTTTTCCCCCCCTCACCCCTCCTCTCCC
CCCCCTCCCCCCCCTCCCCCCCTCCTCCTCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCCTCTTTCATTACCCCCTACCCCCCCCCTC
TTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCACTACCCCCC
ATCACTTTAATACAAACCCCCCCCCCCTCTGAAANAAAATTAAAATAATC
CCACCCCCCCCCCCCCTCTCCCTCCACCTCCCCCTTTTTCCCCCCCTTCC
CCCCCACCCCCCCCCCCCCCCTACCCCCCCTTATCTCCCCCCCCCCCCCC
CCCCCCACACTCCTCCCCCCCCCCACCATACCCCCCCCAAAACTCCCCCC
CCCCCCCTTACCTCCCCCCCCCCCCCCCCCCCCCCACCCCACATCCCCCC
CCCCCTCCCCCCCCCCCCCCTCCTCCCCCCCCCACCCCCTCCCCCCCCCC
CCCCCCCCCCCCCCCTCCCCCCCCCCCTCATCCCCCCCCCACCCCCCCTC
CCCCCCCCCCTCCCCCCCCCCCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGCACTGGCGTTCCTCCT
TTTCCTACAACCTGTTGTCCATACAAATAGCTTCTGTCTTCACAGCTGAA
TACATTTTGGTAATCTTCTATAAAAGGAATCATGTATGCGTCCGGCTTCT
TTTACCTGGCATGTTTGCAAGGTCACCCGTGTGATGGAATGTATTGTAAA
TTCATCGTCCCTCTACCCCCAATTCAAATAGTGTCCTATTGTCTGGATAG
CCCACTTTCTGAATTGTGAATCCAGATATTTTCCCAGTCAGCTAGGGCTG
CTGTAACAAATATGCTTGGCGCGCCTCACAAATAAACATTTATTTCTTAT
AATCTGGAGACTGGAATTCTGGCATTAGGATCCAATAAGATTGGGTTCTG
GGTGAGAGCACTATTTGTAGTTTGCAGGTAGTGCTCTTTTGCCTTTAATA
TACACAGAGCAAGAGAAGGTAAGGAAGGCGATGGTATGTTATAAAATANT
TTCCCCCATCCACCCCTCCCTTTCTCTTTATTATTCCGCATATCTTCTCC
CTTTTTATCTCTTACCCACTCCTACTATTTCTTTTTCTCCCCTCCTTTTT
ATCTTTTTTCCTCCCCTTAACACTTTTTAATTTTACTTCTATCTTTATTC
TATACACAATATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_e24.g1 MSMg01no177_e24.g1 CHROMAT_FILE:
MSMg01no177_e24.g1 PHD_FILE: MSMg01no177_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:52 2005
         (287 letters)



>mm_chr16_35914887_35915571
          Length = 685

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgcactggcgttcctccttttcctacaacctgttgtccatacaaatagcttctgtc 60
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 485 caaatgcactggcgttcctccttttcctacaacctcttgtccataaaaatagcttctgtc 426

                                                                       
Query: 61  ttcacagctgaatacattttggtaatcttctataaaaggaatcatgtatgcgtccggctt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcaca-ctgaatacattttggtaatcttctataaaaggaatcatgtatgcgtccggctt 367

                                                                       
Query: 121 cttttacctggcatgtttgcaaggtcacccgtgtgatggaatgtattgtaaattcatcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttttacctggcatgtttgcaaggtcacccgtgtgatggaatgtattgtaaattcatcgt 307

                                                                       
Query: 181 ccctctacccccaattcaaatagtgtcctattgtctggatagcccactttctgaattgtg 240
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 306 ccctccacccccaattcaaatagtgtcctattgtctggatatcccactttctgaattgtg 247

                                                          
Query: 241 aatccagatattttcccagtcagctagggctgctgtaacaaatatgc 287
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 246 aatccagata-tttcccagtcagctagggctgctgtaacaaatatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 685
Length adjustment: 9
Effective length of query: 278
Effective length of database: 676
Effective search space:   187928
Effective search space used:   187928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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