BAC Information

Click to search

BAC

Clone NameMSMg01-177H04
Chromosome16 (Build37)
Map Location 80,539,780 - 80,540,098
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H04.T7 (MSMg01no177_h04.b1)MSMg01-177H04.TJ (MSMg01no177_h04.g1)
ACCAG371835AG371836
length706716
length of high quality
(start - end)
323 (45 - 367)640 (77 - 716)
definitionCHROMAT_FILE: MSMg01no177_h04.b1 PHD_FILE: MSMg01no177_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:01 2005CHROMAT_FILE: MSMg01no177_h04.g1 PHD_FILE: MSMg01no177_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTCATTGTTAACGTCAGAGGTCACAAGTTCTTTTATGTATAAA
GCTCTAGGTGGAGAAGCAGATGCTAGGATTGACTAGTCTTAACTTCAGAG
CAGGGGGTTTCAACATCAGTTGCTTGTTAAACTTTGTCTTTAAGAATGAA
ACGAGGACATTTTCTTGGAATGCTTAACAGGCCAGTTTCTGGAACAGTCA
ATTTCCCAGCCGATTATTTTTCTTTATGATCACATGGCTACATTTTAGTT
GGATATGTCAAGAGGACTCTTATTTTCATTTTGAAATGTTGACTGTAAAG
AGGTTTTATTTTCCTGTGACCGTATATAATTTGTTCATTAATACCCAAGG
TTGTTAATAATGGAGACAGGCTTTGAGATGAAGATATAGGGAATGTATCT
AGATAATATCCAACTGCTTTAATCATATACATTATATTATATAACCATGG
ATAACTACTATGCATAGTTTTATGAGAAATGAACAATAAAATATTCACAC
TAATCTGTGTAACTCTATGATACAATTTCTGCAAGTTAGGCATTTTATGT
ACTTCATTTTAGAATATTGAAGCATAAAACTGAAGCACAGTGAAAGTCAC
AAAGTGTTCTAAGAATAGGCAGCATATGAAGAACTAACATGTATTTCTTG
GTGTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTAATCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h04.b1 MSMg01no177_h04.b1 CHROMAT_FILE:
MSMg01no177_h04.b1 PHD_FILE: MSMg01no177_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:01 2005
         (323 letters)



>mm_chr16_80539576_80540298
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctcattgttaacgtcagaggtcacaagttcttttatgtataaagctctagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctcattgttaacgtcagaggtcacaagttcttttatgtataaagctctagg 264

                                                                       
Query: 65  tggagaagcagatgctaggattgactagtcttaacttcagagcagggggtttcaacatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggagaagcagatgctaggattgactagtcttaacttcagagcagggggtttcaacatca 324

                                                                       
Query: 125 gttgcttgttaaactttgtctttaagaatgaaacgaggacattttcttggaatgcttaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgcttgttaaactttgtctttaagaatgaaacgaggacattttcttggaatgcttaac 384

                                                                       
Query: 185 aggccagtttctggaacagtcaatttcccagccgattatttttctttatgatcacatggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggccagtttctggaacagtcaatttcccagccgattatttttctttatgatcacatggc 444

                                                                       
Query: 245 tacattttagttggatatgtcaagaggactcttattttcattttgaaatgttgactgtaa 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacattttagttgggtatgtcaagaggactcttattttcattttgaaatgttgactgtaa 504

                              
Query: 305 agaggttttattttcctgt 323
           ||| |||||||||||||||
Sbjct: 505 agaagttttattttcctgt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)