BAC Information

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BAC

Clone NameMSMg01-178A02
Chromosome16 (Build37)
Map Location 55,190,807 - 55,191,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178A02.T7 (MSMg01no178_a02.b1)MSMg01-178A02.TJ (MSMg01no178_a02.g1)
ACCAG372225AG372226
length695700
length of high quality
(start - end)
371 (48 - 418)401 (77 - 477)
definitionCHROMAT_FILE: MSMg01no178_a02.b1 PHD_FILE: MSMg01no178_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:41 2005CHROMAT_FILE: MSMg01no178_a02.g1 PHD_FILE: MSMg01no178_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTACTACTAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTGTGGCAGCACCAATTGTTGAAAA
TGTTGCCTTTCTTCCACTGGATGGTTTTAGCTCCTTTGTCGAAGATAAAG
TGTCCTTATTGGTGTGCCCCCACCCCCGCTTTTTCATTTTATTCCTTCGC
TATACTTGCTTGCCCCTATTTTATTATCCTTTTCTTTTATCATCTTTGCC
TCCGCTAAAAACCTCTTATTCTGGTCTGTTGTTATCCCTCCCCTC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATTGTGAAAAAAATCTAATTTC
GACCCTGGATCATTTAGCACTTATTGTCCGTGTGAGATAAAGGTAGATGC
TTTAATTTGAACTATGCTAATCAACTTTAAAAAGCCATTTCAGGAAACAA
TTGTAAATCCTCCACAATAACTCATGCCCTCAGGAATAAGCTGGGATCCC
TGCTTTCTGGGCATTATTTTACCAAATACATGAACAAGTGCATTGAAGTC
TTTCCTTGCTGTTCTTTACTTTCTATGATCAGTTCTGTAAGAGTCACATT
GGATTCCATATTTATTGGTTCTATTATTTCACTCTCTATCAATGGGCAAT
GAGTCATAGAGCAAAGCATAATACTTAGGGAGTCCATCAGATCCAAAACC
ACTCACACACCTGAAAGTAAGTCATCTATGAACTGCGAGACCTGATGCCC
TCCCGTTCTTCCCTCTGTTAAGAAGAGTGAGTCATCATCAATAAAATGAT
TCACAACTAAAACTAACAGCTAGGACACTTTAAAAGAAAATTTCAGTTTC
TGTAACCACTGATTTCTATATACCAAATAATGAGGTATGAGTTGGCAAAT
TACTGTTTACATCCCACAATAATTTTTAAAACCTCTGCAACTACATTGCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_a02.g1 MSMg01no178_a02.g1 CHROMAT_FILE:
MSMg01no178_a02.g1 PHD_FILE: MSMg01no178_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:41 2005
         (401 letters)



>mm_chr16_55190607_55191408
          Length = 802

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%), Gaps = 1/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattgtgaaaaaaatctaatttcgaccctggatcatttagcacttattgtccgtgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattgtgaaaaaaatctaatttcgaccctggatcatttagcacttattgtccgtgtgag 260

                                                                       
Query: 61  ataaaggtagatgctttaatttgaactatgctaatcaactttaaaaagccatttcaggaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ataaaggtagatgctttaatttgaactatgctaatcaacattaaaaagccatttcaggaa 320

                                                                       
Query: 121 acaattgtaaatcctccacaataactcatgccctcaggaataagctgggatccctgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaattgtaaatcctccacaataactcatgccctcaggaataagctgggatccctgcttt 380

                                                                       
Query: 181 ctgggcattattttaccaaatacatgaacaagtgcattgaagtctttccttgctgttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggcattattttaccaaatacatgaacaagtgcattgaagtctttccttgctgttctt 440

                                                                       
Query: 241 tactttctatga-tcagttctgtaagagtcacattggattccatatttattggttctatt 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttctatgaatcagttctgtaagagtcacattggattccatatttattggttctatt 500

                                                                       
Query: 300 atttcactctctatcaatgggcaatgagtcatagagcaaagcataatacttagggagtcc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 atttcactctctatcaatgggcaatgagtcatagagcaaagcataatacttagggaatcc 560

                                                 
Query: 360 atcagatccaaaaccactcacacacctgaaagtaagtc 397
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagatccaaaaccactcacacacctgaaagtaagtc 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space:   310856
Effective search space used:   310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)