Query= MSMg01no178_j20.b1 MSMg01no178_j20.b1 CHROMAT_FILE:
MSMg01no178_j20.b1 PHD_FILE: MSMg01no178_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:27 2005
(585 letters)
>mm_chr16_97831778_97832762
Length = 985
Score = 1007 bits (521), Expect = 0.0
Identities = 563/581 (96%), Gaps = 7/581 (1%)
Strand = Plus / Plus
Query: 5 gaattctcaaatccaccgcgggcccgcaccgtcgcctcgggtcaccgcacgcgatggttg 64
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattctcaaagccaaggcgggcccgcaccgtcgcctcgggtcaccgcacgcgatggctg 264
Query: 65 agcactcccttcccacaggtgacagacaattcccgtcttgccaaggtccccagggcccag 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcactcccttcccacaggtgacggacaattcccgtcttgccaaggtccccagggcccag 324
Query: 125 cagcgccgcctgtatcggcccttggcatctcagccagttttcagtttctctccacctctg 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 cagcgccgcctgtatcggcccttggcatcttagccagttttcagtttctctccacctctg 384
Query: 185 tagagaccaaggagcggaaggagttcaggtaaccagcccgactgccgactgccgagattt 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 tagagaccaaggagcggaaggagttcaggtaaccagcccgactgccga-------gattt 437
Query: 245 tcccgaaacaaagagaactgcggacaatcctctagctctgcgctctaggaaaggatatca 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 tcccgaaacaaagagaactgcggacaaacctctagctctgcgctctaggaaaggatatca 497
Query: 305 gcacgtgacgcgagccaagggcttgctccactgaaggaccccggcccctaggaactctct 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 498 gcacgtgacgcgagccaagggcttgctccactgaaggaccccggcccccaggaactctct 557
Query: 365 tctccaagctattagtcagggatccgcaagaccacaagccaagccgctcgaatctataga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctccaagctattagtcagggatccgcaagaccacaagccaagccgctcgaatctataga 617
Query: 425 gttgatttgggatctctgccgcgcgtcacggaatcggggtcgtcgggaccccttcccagt 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gttgatctgggatctctgccgcgcgtcacggaatcggggtcgtcgggaccccttcccagt 677
Query: 485 ccccaggacgtacactcgggcgaatcagtcagacggtcgcacctgtagtgccttggtctc 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 678 ccccaggacgtacactcgggcgaatcagtcagacggtcgcacctgtagtgccttggcctc 737
Query: 545 tcctaactcacttgtaccctagacgcccaggtccggcaccg 585
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 738 tcctaactcacttgtaccctagacgcccaggcccggcaccg 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_j20.g1 MSMg01no178_j20.g1 CHROMAT_FILE:
MSMg01no178_j20.g1 PHD_FILE: MSMg01no178_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:27 2005
(279 letters)
>mm_chr16_97984771_97985449
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 1 caggctgggagaaggtgggctcgggcggcttcgggcaggtgtaccaggtgcgccatgtgc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 caggctgggagaaggtgggctcgggcggcttcgggcaggtgtacaaggtgcgccatgtgc 420
Query: 61 actggaagacgtggctcgcgatcaagtgctcgcccagtctgcacgtcgacgacaggtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 actggaagacgtggctcgcgatcaagtgctcgcccagtctgcacgtcgacgacaggtcag 360
Query: 121 ctcccgggcggggccgggtgggatgggggctccgtgctacgtgaagcgccgcggaagaga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 ctcccgggcggggccgggtgggatgggggctgcgtgctacgtgaagcgccgcggaagaga 300
Query: 181 gtttgcgccactcaggccaccggtccctcgcagctccagtgcttctgggattcggagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtttgcgccactcaggccaccggtccctcgcagctccagtgcttctgggattcggagctg 240
Query: 241 gtggtgagcgatggccctgagccctgtgaggtgcgtcgg 279
| || ||||||||||||||||||||||||||||||||||
Sbjct: 239 gcggggagcgatggccctgagccctgtgaggtgcgtcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
