BAC Information

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BAC

Clone NameMSMg01-178K22
Chromosome16 (Build37)
Map Location 22,886,531 - 22,886,712
singlet/doubletsinglet
Overlap genenone
Upstream geneMap3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11
Downstream geneAhsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178K22.T7 (MSMg01no178_k22.b1)MSMg01-178K22.TJ (MSMg01no178_k22.g1)
ACCAG372694AG372695
length749728
length of high quality
(start - end)
189 (45 - 233)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no178_k22.b1 PHD_FILE: MSMg01no178_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:32 2005CHROMAT_FILE: MSMg01no178_k22.g1 PHD_FILE: MSMg01no178_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCTTGTATCTGTACCTCAAGTGAACGCCAGGCACCAGAGGAATTCTT
GCAACGGTAGCTGTTCTGCAGGCCCTTTGTGGGGCTCGCCGGGCAGGAGG
CAGGTTCTGTGGTTACAAAGTTGAATATGGGAGAGAACTCTGCCCATGCC
AGGGCTGTGTGTTTCTGGGTTTCAGGCTGAGNGNNGCAGAAAACCCTTTT
TCTGGTGTTGCNTTACCAGGNCNTNAANNGGTGTNCCCNNNGCCATAAGA
AAGCCCCAATGGTTTTGGTCCAACACCCACGGCTATGGGTAATCACAATT
TGGGAAAAAAAAAAGGGGGGGAAACCCACCCCAATTTGGGTGGGCTTTGG
GGCCCCAAAAACAAAAAAATTTTTTTTCTTCACTTTTTTTATTCGAGGGG
GGCCCATTAATTTTTTTTTTTTTATCGGGGGGGCCCCCCCTCTCTAATCC
CACTATTATTTCAGATTTTTTTTTCACCCTTGTGGCTCTTTNNNNNTTCA
AGCCTCCCNNTTCTTATTATGTTCCCCCCCCCCGCCCCCCCNCGGGAGTG
GGGTATTTAATCTACCNAACCCTGTGTCCCCTCTGNTTTTTTTTCCACNT
AAAGTCCCGCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNTTGGGGNGGG
GTGNAAGGGTNTGNNNNNNNNNNNNNNNNNNTGNNNNNTATNNTTGGNN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCAGGCAGTGGTGGCCCACGC
CTTTAATCCCAGCACTTGGAGGCCCAGGCAGGCGAATTTCTGTGTTTGTG
GCCAGGCTAGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACAAAGAG
AAACCCTGTTTCAAACAAACAAACAAAAGATTCCTAATGATGAGGAAAAA
TTCTTAGGTGAAAAAAAAAAAAAAGAGTCGAGCATGTAAAATAATCACAG
AACTGGAGAACTGGCTCAGAGGTTCCGAGCACTGACTGCTCTTACGGAGG
ACTGCGGTTTGATTCTTCCATGCCCCNTNACAAACCCCTACAACTTCAGT
CTCAAGAGTTCTGATGTCCTCTCCCCCCTCAAAATATACTGTATATACGT
ATTCACAGATTACACATGTAGGCAATAAGCCCATATACCCGAAACAAATA
AATAAATAAATAAATAAATGTTAAAAATTAATTAAAATAATCACAACTTT
TAAGAAAAAGAAGCCACTGAAAATTTCCCACCATTCTCCTTTCTCTCCCC
CCATGAAAAAGATTTAGTGGATATCGTACTAATCCCTTCTGGGGGACAAA
AACTATTCTGTTTTAAATTTGCATACGCCCGACGGTTTGGTGTCACCTTG
TGAATTTCCTTCATGTGCCCACTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_k22.b1 MSMg01no178_k22.b1 CHROMAT_FILE:
MSMg01no178_k22.b1 PHD_FILE: MSMg01no178_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:32 2005
         (189 letters)



>mm_chr16_22886326_22886914
          Length = 589

 Score =  315 bits (163), Expect = 9e-91
 Identities = 178/183 (97%), Gaps = 2/183 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttgtatctgtac-ctcaagtgaacgccaggcaccagaggaattcttgcaacggt 64
           ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 206 gaattcttgtatctg-actctcaagtgaacgccaggcaccagaggaattcttgcgacggt 264

                                                                       
Query: 65  agctgttctgcaggccctttgtggggctcgccgggcaggaggcaggttctgtggttacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctgttctgcaggccctttgtggggctcgccgggcaggaggcaggttctgtggttacaa 324

                                                                       
Query: 125 agttgaatatgggagagaactctgcccatgccagggctgtgtgtttctgggtttcaggct 184
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 agttgaatatgggagaaaactctgcccacgccagggctgtgtgtttctgggtttcaggct 384

              
Query: 185 gag 187
           |||
Sbjct: 385 gag 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)