BAC Information

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BAC

Clone NameMSMg01-178P04
Chromosome16 (Build37)
Map Location 26,953,736 - 26,954,212
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178P04.T7 (MSMg01no178_p04.b1)MSMg01-178P04.TJ (MSMg01no178_p04.g1)
ACCAG372882AG372883
length729757
length of high quality
(start - end)
667 (46 - 712)148 (76 - 223)
definitionCHROMAT_FILE: MSMg01no178_p04.b1 PHD_FILE: MSMg01no178_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:50 2005CHROMAT_FILE: MSMg01no178_p04.g1 PHD_FILE: MSMg01no178_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCACAGACACCGGCCTATTAATTGGTAGTGTTGGTCGGCTAGA
GGGCCCCTATTTCCCAGCTATGGCTTTTTCTGGGAGCTAAAGGGTTGGCA
TTTTACAGCTATGCCTTCCAGCTGACATACGAATTAGGACAACCCTTGAG
TGACCATTCCTTTGAAAGCAACTCTCACTCCCCTCCTAGTCCGGACTCTT
GCAGCTGTTTAAGAAATCCCTGGATCCAGAGTAGGGATTACCTTTTTGCA
GTAAGTCCTGGACATACTGTCTAGCCTCTAGGGGACCTAGTGACAACTTG
GGCCTCTAGCCTGGCTGATTTCTTTTTGGTTATTAGATTGTTCTCAGGAC
ACTGGAACAAATAATACAATAAACCCCCAGTGGGTTCTGTGATATCTTTG
AACATACCTCCAGGCACCCCACTGGGATGTCTCCTGGAAAACCTCAAATC
TTTGAAGCTAACGCCTGATTTGAAGGCATCAAAATTAATATACCTCTGCA
ATAAGGTCTGGATTCAGTACCAGCTACATAATAGTTCCAAATGGCCACTT
AATGGTACTCTAGATCCAATTATTTTAAGGGATCTTANCACATACTGCCA
GTGAACTGGTAAATGGAAAGAGGTCCTCTATGTTCAAGCATTCCTCTATC
TTCGCTCCAATCCCCTCATGTGCTTTTCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTGTGTACCCTATTTT
CAATTGGGTTATTTGAGTTTTTGGAGTCTAACTTCTTTATATATATATAT
ATATGTGTATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATGTGTAAATATATAAACACATATAT
ATATAGATAGAGAGAGAGACAGAGAGATAGAGAGGAGAGTGTGTATATAT
ATATATAGATATATAGATGGGGGGGGGGGGGCGCGCGCGACCCCCCCACT
CGTGTGTATGTGTATATATACCTCCCCCCCCCCANNNNNNNNCNNNNCNC
NNNCCNNCNCCCCTGGCCCCCCAAAAAAAAAACTGCTCGTGGGGGGGGGG
GGTGGCGCCCCCCGGTGTGCGCGGCTCCGACGCTCACCCGTCCGGCCCAA
TATTTCGGCTCGTATCGCCGCGTGCCCTGCCCCCGGACGCCCTCCACCGC
CGGCGGTACGGCTTTTTTACGCCCCCCGTCACCTCCTTACGGCGGTTGCC
GTTTTTCGTGCCGCCCTCCCTCTTTTTTCTCGCTCCTTTTCTCGCCCCGT
GCTCCTCCTGTCGCCCGTCCGCTCCGCCGATCATTAGTTTTCTGCCCCCT
CCGCCCATCTTTTCGTGCTGTTGCCCTGCCTCCCCTCCTCGCCCCCTCCG
TGCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_p04.b1 MSMg01no178_p04.b1 CHROMAT_FILE:
MSMg01no178_p04.b1 PHD_FILE: MSMg01no178_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:50 2005
         (667 letters)



>mm_chr16_26953736_26954802
          Length = 1067

 Score =  891 bits (461), Expect = 0.0
 Identities = 473/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgcacagacaccggcctattaattggtagtgttggtcggctagagggccccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcttgcacagacaccggcctattaattggtagtgttggtcggctagagggccccta 418

                                                                       
Query: 65  tttcccagctatggctttttctgggagctaaagggttggcattttacagctatgccttcc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 417 tttcccagctatggctttttctgggagctaaagggttggcattttacagctacgccttcc 358

                                                                       
Query: 125 agctgacatacgaattaggacaacccttgagtgaccattcctttgaaagcaactctcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agctgacatacgaattaggacaacccttgagtgaccattcctttgaaagcaactctcact 298

                                                                       
Query: 185 cccctcctagtccggactcttgcagctgtttaagaaatccctggatccagagtagggatt 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cccctcctagtccgggctcttgcagctgtttaagaaatccctggatccagagtagggatt 238

                                                                       
Query: 245 acctttttgcagtaagtcctggacatactgtctagcctctaggggacctagtgacaactt 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 acctttttgcagtaaatcctggacatactgtctagcctctaggggacctagtgacaactt 178

                                                                       
Query: 305 gggcctctagcctggctgatttctttttggttattagattgttctcaggacactggaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gggcctctagcctggctgatttctttttggttattagattgttctcaggacactggaaca 118

                                                                       
Query: 365 aataatacaataaacccccagtgggttctgtgatatctttgaacatacctccaggcaccc 424
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 117 aataatacaataaacccccagtgggttctgtgatatcttcgaacatacctccaggcaccc 58

                                                                    
Query: 425 cactgggatgtctcctggaaaacctcaaatctttgaagctaacgcctgatttgaagg 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  cactgggatgtctcctggaaaacctcaaatctttgaagctaacgcctgatttgaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)