BAC Information

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BAC

Clone NameMSMg01-179A08
Chromosome16 (Build37)
Map Location 16,897,574 - 16,897,849
singlet/doubletsinglet
Overlap genenone
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b
Downstream genePpm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179A08.T7 (MSMg01no179_a08.b1)MSMg01-179A08.TJ (MSMg01no179_a08.g1)
ACCAG372932AG372933
length723724
length of high quality
(start - end)
277 (47 - 323)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no179_a08.b1 PHD_FILE: MSMg01no179_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:55 2005CHROMAT_FILE: MSMg01no179_a08.g1 PHD_FILE: MSMg01no179_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGCGCGGA
ATTCTGCAAATTATTCTGTTGTGGGAGGTTAACAGTTATTAGAACAATTG
TTTTGTTTATGTCTCAGAACTGTGTGGGAAAACATGCCATCAGGTCATAC
TGCAGTTGAAAAAAAAACCAGGTGGTAGGAGGAAAGTGTTACTCTAAGGT
CACAAATATTAGTTGTCACCAAAGCAGGACTCAGTTGAGGAATCTGGTGC
CCAGTGACTTGGCCACTTCCATCCCAGTTTGCCGCTGAGTAAAAGTAAAA
TTTGACGATGGGAGGATTATGAACTCTGAGACCATGAGGTATAGGCAGCT
CTCGTTCAGTTCCTCAGGTGGGAACAGTTCACAGGGCTGTCCCAGGGCAC
ATTGTGAACACATCTGTTAATCAAGGGGCCTAGAAATAGGCGGCCTTGGT
AGGGCAGACCACTGCCTTCCACTGGGCCTCACTAGATGTTAGTCTGCAGA
AATCCTTACAATCCCTTTTCTCCTCATTATACGGAGAGTTTACGGGGCTG
GCCTGAGACCACACAACTGTAACGGTGAAGCCCCAGGCTCTCAGGACTGA
GGCTCTACTGCAATCTAGCTCAATGGTTTCAGCCTGTGTCTTGAAACCAG
GTGTTTAAGTAAAACACTAGTTTTAAATACATTTATGGACGCCACTGGGC
TGGGCCATCATGTTGAACACGCG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATG
AGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCC
TGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCT
GGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGGCATCTGGCAATCT
CTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTTTGTTG
ATTTTGTTACCCTCTATCAGCATTTTTTGGGAGACAAGCTCTCTTCTCTG
AGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGG
AAGGTGTACAGTTATCCGGCGTTTGGACCTCCTCCTTCCTGAAGGTGAAG
GCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGT
GGCCAGTTGTCTCGAGCCGAAGATGTCGTCGCCTCATAAGCTCTGTGTTT
CTTGTCTGGAAGGAGGCCGGTCGTCTGGAGTTGAGGCTGTTTTTTCCCCC
GAAGCTCTGTGGCTCTTGCCGTTTATGTTGTTTGTTCGCCCGCATCTTTA
TTTTTCGTCGCCCCTAATTTTCGCTTTTCTTGTCCTTCCCCTTTTCGGTT
TGTTTCTCCGTTTTTTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_a08.b1 MSMg01no179_a08.b1 CHROMAT_FILE:
MSMg01no179_a08.b1 PHD_FILE: MSMg01no179_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:55 2005
         (277 letters)



>mm_chr16_16897373_16898049
          Length = 677

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattctgcaaattattctgttgtgggaggttaacagttattagaacaattgttttgtt 61
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaattctgcaaattaatctgttgtgggaggttaacagttattagaacaattgttttgtt 418

                                                                       
Query: 62  tatgtctcagaactgtgtgggaaaacatgccatcaggtcatactgcagttgaaaaaaaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tatgtctcagaactgtgtgggaaaacatgccatcaggtcatactgcagttgaaaaaaaaa 358

                                                                       
Query: 122 ccaggtggtaggaggaaagtgttactctaaggtcacaaatattagttgtcaccaaagcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccaggtggtaggaggaaagtgttactctaaggtcacaaatattagttgtcaccaaagcag 298

                                                                       
Query: 182 gactcagttgaggaatctggtgcccagtgacttggccacttccatcccagtttgccgctg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gactcagttgaggaatctggtgcccagtgacttggccacttccatcccagtttgccgctg 238

                                               
Query: 242 agtaaaagtaaaatttgacgatgggaggattatgaa 277
           ||||||||||||||||||||||||||||| ||||||
Sbjct: 237 agtaaaagtaaaatttgacgatgggaggaatatgaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)