BAC Information

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BAC

Clone NameMSMg01-179F11
Chromosome16 (Build37)
Map Location 63,603,434 - 63,603,557
singlet/doubletsinglet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179F11.T7 (MSMg01no179_f11.b1)MSMg01-179F11.TJ (MSMg01no179_f11.g1)
ACCAG373153AG373154
length892713
length of high quality
(start - end)
124 (120 - 243)94 (122 - 215)
definitionCHROMAT_FILE: MSMg01no179_f11.b1 PHD_FILE: MSMg01no179_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:20 2005CHROMAT_FILE: MSMg01no179_f11.g1 PHD_FILE: MSMg01no179_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTCAGTGCTCCATTAAACTATAAACAAACAAACAAACACATAAACAAACA
AACAAACAAATAACTCCCTAAATACCAGAGTGTGGAGTGAATTTAAAAGT
ACGGCCATGTAGTTGTCAGTCACACCAGTAATGCTTGTTCTCGTATTTCT
TTCCTTCAACCTTGCAGCTTTCTCCATCTCCGGTGAAAACAGTCATGTGG
TGATGATTGCTATTTCCGCAGCTGTGGTCATCATTGTCCTCACGGTGGTC
ACCTATGTTCTTTTTTTTAGTCGATTCTGCCTTCTCTTCAAGTTCATCCA
TCCTTAGATAACCCCCCCTCTTCTTCTTTTATTTTTTATTTTTTACATAT
ATATATCAACTTTATTTTCTACCCCTCTTCTTTTTTTTTTTTTCTTTATT
TTCTTCATCTTCACTTATCCCTCTATCTTTTCTAATCCCACTCTAACTTT
TCTCTCAACTTACTTTTCAACACCCCTCTTTATTCCTTTCCTTATCTCTC
CCATATATCTCTTTATTTCACTCATTCTTTTACCTTATTTATATTATTTC
ATAATATTTATGTAGTATTCTCTTTTTTTCTCCTTATATTCTCTCTTCCA
CTCATTCTTTATTTTTTTTGTTAACAAACACTACCGACCCTTTATACTTA
TCATTCACTTTCCTCCCATAACTCTATTCATTTCCTTTCTTCCCTTCTAT
AATTTTCTAATACTATTCTCTTTAGTTATTCCCTCTCTTCTCATTAAACC
TTCTTTATGATCGCTTCTTTATCTATTTCTCACTATCCTATTACTCTTTT
TATCTCCACCTTTATTTTTTTCTATCTCCTCCCTCTTATATA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTACCCGAGAAATTCATTAAATCCAACTTGACGTCAATATAGGTATT
ATGAACATATAAACCAAAGAAAAATTTTGGAAATATATATCTATATATAC
ATATATCTACATATCTATATATCTATATATCCATATATCCATATATCCAC
ATATCCACATATCCACATATACATCTATCCCCATATCCACATATACATCT
ATCCCCATATCCACATATCTATCTATATATATATATCTATCTCAATCTCA
ATCTCAATCTCTATCTCTATCTCCATCTCTATCTATATCTATATCTATAT
GTTTTTCTCCCCCTCCACACTCTCCTCTACTTCTATCTCTATATCTATAT
CGATCTGCCACAAAATGTAATAATTACTCCTACCTATTGTTCCAAGACAA
TTCATGAGATCGGCATGTTGAAGATATAGCTCACTAATAATAATGTTATG
ATAAACATCTGAAAACCGGATGTTGATATATCTTACTCAGAGTTTAGGAT
GATTGGCTGATGATGTTGAATCCCGATATCCAATGAATTTAGATGAAACT
ATTATTGATTGGTTAATGATGATGTAAAATTACACCCTATCGAAACGGAC
GAGGGTTTTAAGATAGTGAACTTATTACTTGATTTTACCTTTTTCCTAAC
GATTGACCGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_f11.b1 MSMg01no179_f11.b1 CHROMAT_FILE:
MSMg01no179_f11.b1 PHD_FILE: MSMg01no179_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:20 2005
         (124 letters)



>mm_chr16_63603234_63603757
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataccagagtgtggagtgaatttaaaagtacggccatgtagttgtcagtcacaccagt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 aaataccagagtgtggagtgaatttaaaagtacggccatgtagctgtcagtcacaccagt 265

                                                                       
Query: 61  aatgcttgttctcgtatttctttccttcaaccttgcagctttctccatctccggtgaaaa 120
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 aatgcttgttctcttatttctttccttcgaccttgcagctttctccatctccggtgaaaa 205

               
Query: 121 cagt 124
           ||||
Sbjct: 204 cagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)