Query= MSMg01no179_l03.b1 MSMg01no179_l03.b1 CHROMAT_FILE:
MSMg01no179_l03.b1 PHD_FILE: MSMg01no179_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:46 2005
(674 letters)
>mm_chr16_25199690_25200760
Length = 1071
Score = 1185 bits (613), Expect = 0.0
Identities = 656/673 (97%), Gaps = 7/673 (1%)
Strand = Plus / Plus
Query: 5 gaattcaggggaggccaacctcccagtaaagacttggtggctgtttggtattaagtgaca 64
|||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 205 gaattcaggggaggtaaatctcccagtaaagacttgttggctgtttggttttaagtgaca 264
Query: 65 tagtttgcttctgccaagtgcaccatcatccatgagtgacagaaggaggcatgcaggtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtttgcttctgccaagtgcaccatcatccatgagtgacagaaggaggcatgcaggtaa 324
Query: 125 aaacatgaaggatgcataaaagcatgggaaggatgtgggcacatctggtctggagaacca 184
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 aaacataaaggatgcataaaagcatgggaaggaggtgggcacatctggtctggagaacca 384
Query: 185 tgctgtttggtttaggagacctggtccttgcttggctttctcctttcctggctgtgtaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctgtttggtttaggagacctggtccttgcttggctttctcctttcctggctgtgtaat 444
Query: 245 tttagacagagcattaattagtccctcttgttttgaggatgattaaccaagagaaaatga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttagacagagcattaattagtccctcttgttttgaggatgattaaccaagagaaaatga 504
Query: 305 aagtgtgcacacatgggctgggttcagtacagaagtacttggtttaagttttaaagtatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagtgtgcacacatgggctgggttcagtacagaagtacttggtttaagttttaaagtatg 564
Query: 365 ctttatctaggagacaggaagacctagaactatgtttggcatcttatcaggaggccagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttatctaggagacaggaagacctagaactatgtttggcatcttatcaggaggccagaa 624
Query: 425 aactggtggtgaattctgtcatctaactctttttttttttggcacttatttatttattat 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 aactggtggtgaattctgtcatctaactctttttttt---ggcacttatttatttattat 681
Query: 485 ttagtttacactccaaattttattcccccctccaccctctgactgttccacatcccatac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 682 ttagtttacactccaaattttattcccccctccaccctctgactgttccacatcctatgc 741
Query: 545 ctcctccccaccctcctgtctccatgaggatgtccccacacccatcccccaccaaaccag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 742 ctcctccccaccctcctgtctccatgaggatgtccccacacccatcccccacccaaccag 801
Query: 605 a---tctctaaacttcctggggcctcttgaggtaaggtccatctactctgactgaaccca 661
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaact-tctaaacttcctggggcctcttgaggtaaggtccatctactctgactgaaccca 860
Query: 662 gacccgactgtcc 674
|||||||||||||
Sbjct: 861 gacccgactgtcc 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1071
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1061
Effective search space: 704504
Effective search space used: 704504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_l03.g1 MSMg01no179_l03.g1 CHROMAT_FILE:
MSMg01no179_l03.g1 PHD_FILE: MSMg01no179_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:46 2005
(499 letters)
>mm_chr16_25344202_25345099
Length = 898
Score = 905 bits (468), Expect = 0.0
Identities = 489/496 (98%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 acttgagcagaagccaagaactcaaccccatggtgaggagctagcaggcggatagaacag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 530 acttgagcagaagccaagaactcaaccccatggtgaggagctagcaggaggatagaacag 471
Query: 61 aagcagagaacagaacaactgcatacatctctcatcctccactcttttctatttattgag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 470 aagcagagaacagaacaactgcatacgtctctcatcctccactcttttctatttattgag 411
Query: 121 aggcaaaacaaagatctgcttgttgtggtctattaattgtggctctctgggtacagaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggcaaaacaaagatctgcttgttgtggtctattaattgtggctctctgggtacagaaag 351
Query: 181 cacagtccaaactagtcaaacccaggaggagggtagatgctataaaaatacatggggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cacagtccaaactagtcaaacccaggaggagggtagatgctataaaaatacatggggaat 291
Query: 241 cccactgaaatccaagaacagcaccaatcacagataagttttatggatgccagaaatcca 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 290 cccactgaaatccaagaacagcaccaatcacagataagttttatggaagccagaaatcca 231
Query: 301 ccacggagctagaggcaaagagatgtactcctttttttaattataattcttttttattag 360
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 caa-ggagctagaggcaaagagatgtactcctttttttaattataattcttttttattag 172
Query: 361 atattttcttcatttatatttcagatgctatccccaaagccccccatcctctccccccaa 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 171 atattttcttcatttatatttcaaatgctatccccaaagccccccatcctctccccccaa 112
Query: 421 ccctgctccccaacccaccgactcccacttcctggtagaagtagtctctagcaaaacttc 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 111 ccctgctccccaacccaccgactcccacttcctggtagaagtagtctctatcaaaacttc 52
Query: 481 agtgcctcatacactg 496
||||||||||||||||
Sbjct: 51 agtgcctcatacactg 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space: 434232
Effective search space used: 434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
