CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTATCTCTGTACCCCATTTCTAAATAGGATCATTTGGTTTTC
TGGAGTCTAACTTCTTGAGTTCCTTATATATATTGGATATTAGCCCTCTA
TCAGATTTAGGATTGGTAAAGATATTTTCCCAATCTGTTGGTTGCCTTTT
TGTCTTATTGACAGTATCCTTCGCCTTACAGAAGCTTTACAATTTTATGA
GGTCCCATTTGTCTATTCTTGATCTTACAGCACAAGCCATTGGTGTTCTG
TTCAGGAATTTTTTCTCCTGTGCCAATATCTTCGAGGCTTTTCCTCACTT
TCTCCTGTATACGTTTCAGTGTCTCTGATTTTATGTGGAGTCCTTTGATC
CACTTAGACTTGAGCTTTGTACAAGGAGTTAAGAATGGAAAAATTCGCAT
TCTTCTACATGCTAACTGTCAGTTGAAACATTACCATTTGTTACAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAACTCCTTTGTCAAAGATCAAGTGA
CCATAGATGTGTGGGTTCATGTCTGGGTCTTCAGCTCTATTCCATTGATC
TACCTGTCTGTCATTGTACCAGTACCATACAGTTTTCATCACAATTGCTC
TGTAGTACAGCTTGAGGTCAGGGATGGTAATTCCGCCAGAGGTTCTTTTA
TTGTTGAGAATAGTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTGCTCAGTTCAGTACTGAACTTGT
TTTATTTTACATTTTATTTTTAGGACCTATTTGTCTGTAATGGTCCCTTT
TATAATTCTTCCAGATATGTTTTGGCAAGTATGCTAGATACTCTCTCATT
TAAACTCTGCTCAGATGTTGCTATACTTTAAAATTTGCCCATCTATATTT
CTATATGCTTAAATGTAATTAAGCAGACAATATATATATACATACACATA
TACATATATATATATACTTATATATGCTTATGTTTACGTATGCATACTAG
TGTTCTTACATTAATTTTCACTTACACAAATAGCTACCAATTTCTTAGCT
TCATTTAAAACCTTGGTTCCTCCATTTTCTAAGGCTAGACTAATTTTTAA
TATTAATGTTTTTTATTTCTGAATATTCTTTGTCAATTTGGGTTAGTGGA
AATTAGATCTTCATTATTATGGGCATTTCTAATATAATCGCTTTGCATTC
TTCAGTTAATGCACAATATTACTTTTCCTTTTTTGTTGCTTCTGTTGTTT
TCCTTAGTCATTGGGAATAGTGTTTCCTGTATCTATTTAACAGCTTCCCC
CTCTCTTTGCACATCACCTTCTGTTTTCACTCAGGTATGATCACTTAAGC
CTTCCCCTGGAGCTGAGN

Query= MSMg01no180_i01.g1 MSMg01no180_i01.g1 CHROMAT_FILE:
MSMg01no180_i01.g1 PHD_FILE: MSMg01no180_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:45 2005
         (626 letters)



>mm_chr16_66831874_66832897
          Length = 1024

 Score =  928 bits (480), Expect = 0.0
 Identities = 587/626 (93%), Gaps = 8/626 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgctcagttcagtactgaacttgttttattttacattttatttttaggacctatttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 818 agttgctcagttcagtactgaacttgttttattttacattttatttttaggagctatttg 759

                                                                       
Query: 61  tctgtaatggtcccttttataattcttccagatatgttttggcaagtatgctagatactc 120
           ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 758 tctatgatggtcccttttataattcttccagatatgttttggcaagtatgctagatgctc 699

                                                                       
Query: 121 tctcatttaaactctgctcagatgttgctatactttaaaatttgcccatctatatttcta 180
           |||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 698 tctcatttactctctgctcagatgttgttatactttaaaatttgcctatctatatttcta 639

                                                                       
Query: 181 tatgcttaaatgtaattaagcagacaatatatatatacatacacatatacatatatatat 240
           ||||||||||| | |||||| ||| | | | ||||||| |     |||| |||| |||||
Sbjct: 638 tatgcttaaatatcattaagtagatagtgtgtatatac-t-----tatatatatgtatat 585

                                                                       
Query: 241 atacttatatatgcttatgtttacgtatgcatactagtgttcttacattaattttcactt 300
           |||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 584 atacttatatatgcttacatttacatatgcatactagtgttctcacattaattttcactt 525

                                                                       
Query: 301 acacaaatagctaccaatttcttagcttcatttaaaaccttggttcctccattttctaag 360
           ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 524 acacacatagctaccaatttcttagcttcatttaaaacc--agttcctccattttctaag 467

                                                                       
Query: 361 gctagactaatttttaatattaatgttttttatttctgaatattctttgtcaatttgggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gctagactaatttttaatattaatgttttttatttctgaatattctttgtcaatttgggt 407

                                                                       
Query: 421 tagtggaaattagatcttcattattatgggcatttctaatataatcgctttgcattcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 406 tagtggaaattagatcttcattattatgggcatttctaatataattgctttgcattcttc 347

                                                                       
Query: 481 agttaatgcacaatattacttttccttttttgttgcttctgttgttttccttagtcattg 540
           |||||||||||| | ||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct: 346 agttaatgcacattgttatttttccttctttgttgcttctgttgttttccttagtctttg 287

                                                                       
Query: 541 ggaatagtgtttcctgtatctatttaacagcttccccctctctttgcacatcaccttctg 600
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 286 ggaatagtgtttcctgtatctatttaacagcttccccctccctttgtacatcaccttctg 227

                                     
Query: 601 ttttcactcaggtatgatcacttaag 626
           ||||||||||||||||||||||||||
Sbjct: 226 ttttcactcaggtatgatcacttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1024
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1014
Effective search space:   624624
Effective search space used:   624624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)