BAC Information

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BAC

Clone NameMSMg01-180O03
Chromosome16 (Build37)
Map Location 22,951,182 - 23,164,579
singlet/doubletdoublet
Overlap geneHrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq
Upstream geneLiph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub
Downstream geneLOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180O03.T7 (MSMg01no180_o03.b1)MSMg01-180O03.TJ (MSMg01no180_o03.g1)
ACCAG374231AG374232
length757753
length of high quality
(start - end)
306 (42 - 347)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no180_o03.b1 PHD_FILE: MSMg01no180_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:14 2005CHROMAT_FILE: MSMg01no180_o03.g1 PHD_FILE: MSMg01no180_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,951,182 - 22,951,480)(23,164,293 - 23,164,579)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCTGCTATCGTGGACCACAGTCAAGGATGGTTTAGCACAATGAAGGT
GCTCACCACAGCATTGCTTCTAGTCACCCTGCAGTGTTCCCATGCCCTGA
GTCCCACCAACTGTGATGCTTCTGAGCCTCTGGCTGAGAAAGTTCTAGAC
CTGATCAATAAAGGGCGGAGGAGTGGCTATGTTTTCGAGCTGCTGCGGGT
CTCTGATGCCCACTTGGACAGAGTGGTAAGACATGGCCAATGGAGGAGTT
GAGCTGGGAGACAATGTGGAAGGTGGGAAAGGGATTGGAGGAGCNGACTG
TTTTGTGTAATTAACACCTTTCAACAGGTTTCCTGTTTTAGTTTCCGAGT
TGTGTTCTTTTTTTCCCCCCCCGGGGGTTACCCTAACTTTCGTCTTAGCC
TTATTATCACTTAACCTATTTATACTCACTCACTTTTCTTTCCCTCTTTT
ATTTTCTTTCCATTTTCCCCACTCCCTTTCTCTTTTCCCCTCCTATTTTT
CTTTCCTTTTTTTCTCCTCCTCCTCCTTCTTTAATCTTTAACCCTTTTAA
CTTTTTCCCCCCGCCAGCTTTTCTTCCTCTTTTCCCTTTCTCCATTATTC
TTTTCTTTCTTTTCTCTCTCTTTCTTTTTCTTACATGTATACTCCTATCT
TGTTCCTACCCTTTCCTACTCTTATTTTTTTCCCTTCATTACCCTTCCGT
TCTCTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAAAGGATCCACACCCATGGAGGATGAGAC
ACTGTGTGTAATCTGAGCCTAAGCCAGTTAACTCTGCTCACACAAATATG
CACATTTACTTGAGGATTTTAAGAGAAGCCAGGGTCTTGCTTCACAATAT
CCAAATGTGCTAGTTCCAACACAAAATCCCAAGCCACCATGGCAGATGAA
GGCCAACCTGGGAGACACAAGGAGACCTCCCTGTAAAGAAACAAAACATC
ATCTAATCCACTAAGAACCTGAGAAATCGTCCCAATATTCAGGAGAGAGA
GGGGGGCTGGTCGGTGGCCCCCCCCCCCCCCTTTTTTGTTTTTTTNTTTT
TTTTTTCTCCCCCCCCTTTATAAAAAAAAATAACTCGTGGGGGTGGGTTC
ACTCCTACATAATCTGCTCATATTTCATCATTCTTATTCTTTTCAACTCT
CCTTTCTCATTTTTTCTATATTTCCCCCTCTATCCTTTTTACCCCACCTC
TAATTTTCTTTCCTTTCCCCTGCATCCCTTTTCTTCTCACCCCATTATTT
TTTTCATTTCTTTACCACTAATTACCTTCCCTATCTTCCCCTCTATTTTT
CCACTTTTATTACTATCCGTTTCCTTTACCCTACCATTCTTTTACCCTCT
TAAATACACTTTTTTATCCCTTTTCTTACCATTTTTCACCCCCTGCCCCC
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_o03.b1 MSMg01no180_o03.b1 CHROMAT_FILE:
MSMg01no180_o03.b1 PHD_FILE: MSMg01no180_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:14 2005
         (306 letters)



>mm_chr16_22950978_22951683
          Length = 706

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctgctatcgtggaccacagtcaaggatggtttagcacaatgaaggtgctca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctgctatggtggaccacagtcaaggatggtttagcacaatgaaggtgctca 264

                                                                       
Query: 65  ccacagcattgcttctagtcaccctgcagtgttcccatgccctgagtcccaccaactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccacagcattgcttctagtcaccctgcagtgttcccatgccctgagtcccaccaactgtg 324

                                                                       
Query: 125 atgcttctgagcctctggctgagaaagttctagacctgatcaataaagggcggaggagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcttctgagcctctggctgagaaagttctagacctgatcaataaagggcggaggagtg 384

                                                                       
Query: 185 gctatgttttcgagctgctgcgggtctctgatgcccacttggacagagtggtaagacatg 244
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 385 gctatgttttcgagctgctgcgggtctctgacgcccacttggacagagcggtaagacatg 444

                                                                      
Query: 245 gccaatggaggagttgagctgggagacaatgtggaaggtgggaaagggattggaggagc 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccaatggaggagttgagctgggagacaatgtggaaggtgggaaagggattggaggagc 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no180_o03.g1 MSMg01no180_o03.g1 CHROMAT_FILE:
MSMg01no180_o03.g1 PHD_FILE: MSMg01no180_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:14 2005
         (289 letters)



>mm_chr16_23164093_23164781
          Length = 689

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaaggatccacacccatggaggatgagacactgtgtgtaatctgagcctaagccagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acaaaggatccacacccatggaggatgagacactgtgtgtaatctgagcctaagccagtt 428

                                                                       
Query: 61  aactctgctcacacaaatatgcacatttacttgaggattttaagagaagccagggtcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aactctgctcacacaaatatgcacatttacttgaggattttaagagaagccagggtcttg 368

                                                                       
Query: 121 cttcacaatatccaaatgtgctagttccaacacaaaatcccaagccaccatggcagatga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cttcacaatacccaaatgtgctagttccaacacaaaatcccaagccaccatggcagatga 308

                                                                       
Query: 181 aggccaacctgggagacacaaggagacctccctgtaaagaaacaaaacatcatctaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aggccaacctgggagacacaaggagacctccctgtaaagaaacaaaacatcatctaatcc 248

                                                          
Query: 241 actaagaacctgagaaatcgtcccaatattcaggagagagagggggg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 actaagaacctgagaaatcgtcccaatattcaggagagagagggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)