Query= MSMg01no181_h01.b1 MSMg01no181_h01.b1 CHROMAT_FILE:
MSMg01no181_h01.b1 PHD_FILE: MSMg01no181_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:54 2005
(435 letters)
>mm_chr16_17728027_17728861
Length = 835
Score = 698 bits (361), Expect = 0.0
Identities = 389/401 (97%), Gaps = 9/401 (2%)
Strand = Plus / Plus
Query: 5 gaattctgtctatctcgatcatggatttagaccaagaataaggagagaatcagaaactca 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtctaccttgatcatggatttagaccaagaataaggagagaatcagaaactca 264
Query: 65 cacccaaacataaaatctgttttgtaaattaatgaaataggattcatcagttcaaggaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacccaaacataaaatctgttttgtaaattaatgaaataggattcatcagttcaaggaaa 324
Query: 125 tattgatgtgaagataagatatgaagatactgatgtaaaccagtagctattcctgtgttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattgatgtgaagataagatatgaagatactgatgtaaaccagtagctattcctgtgttc 384
Query: 185 aaagcaacagggcctttttgagcctttttttttttttttttttttttactttttaaaatt 244
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 aaagcaacagggcctttttgagccttttttttttttttttttttt--actttttaaaatt 442
Query: 245 aaaaatctattttttt-gtttcttcttctttttcctttctttcttcctttctttctttct 303
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 aaaaatctattttttttgtttcttcttctttttcctttctttctttctttctttctttct 502
Query: 304 ttcttttttcctttctttctttctttc-tttctttctttctttctttctttctttctttc 362
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 503 ttcttt----ctttctttcttt-tttcctttctttctttctttctttctttctttctttc 557
Query: 363 tttctttctttctttctttctttctttctttctttctttct 403
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttctttctttctttctttctttctttctttctttctttct 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 213
Number of extensions: 47
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_h01.g1 MSMg01no181_h01.g1 CHROMAT_FILE:
MSMg01no181_h01.g1 PHD_FILE: MSMg01no181_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:54 2005
(365 letters)
>mm_chr16_17809773_17810537
Length = 765
Score = 675 bits (349), Expect = 0.0
Identities = 361/365 (98%)
Strand = Plus / Minus
Query: 1 tggatgcagttatatgtagggtacatgctgctgtgtgtttgttctgtgcccctgggccac 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 tggatgcagttatatgtagggtacatgctgctgtgtgtttgttctgtgtttctgggccac 506
Query: 61 actgatttgtcacacgtgtgtgttttgcattgtgttgtatttctgtgcatctagtggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgatttgtcacacgtgtgtgttttgcattgtgttgtatttctgtgcatctagtggcaa 446
Query: 121 aggtatgtgtgccacaagacagcaactgctggtgtgtgcacatgtataagctgtctggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtatgtgtgccacaagacagcaactgctggtgtgtgcacatgtataagctgtctggca 386
Query: 181 cagcctggcctctctgagtgatgtgtgctacatcctgctggaaaccagacggagcccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagcctggcctctctgagtgatgtgtgctacatcctgctggaaaccagacggagcccagg 326
Query: 241 cccctctccagtccccacattcctttgtgctctgtgttacaaaaaaatatttgcgttttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccctctccagtccccacattcctttgtgctctgtgttacaaaaaaatatttgcgttttc 266
Query: 301 cacgactcataatttttcctcctcaatcactaccagatgtgagctctgtgttccccgtcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 cacgactcataatttttcctcctcaatcactaccagatgtgagctctgtggtccccgtcc 206
Query: 361 ccatg 365
|||||
Sbjct: 205 ccatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
