XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATGAATTGCCTCATTTCAGCTCAACAGACAATTTTACCAGTTACAAACC
TTATCAATAATTATGATAGCTGATTAAGTTTTAGCAAGTCTTCAAGCCCA
AATATGATTCTAGAGGTAGTCTGGGCCAAATACTTAATAATGGGTACATC
CATTACCAAACCTGAAATATGAGTCCTGGAATTGAAGGCTAGGCAATGAA
CACTTCAGTCATGTTGAAGAGGGAATAGATGTCCCTGATCTCGACAGCCT
CAGAGGCTTTGTATGGTTCTGTGGTTCTATTACAGCCATAGGGCTTGTTT
GTGTTCTATACTATTGCCAGAAAGTGTGAGTAAGTCCATGACCTGAGCTA
CAGGTGATTGTAAAGAGCAAGGAAGCTGCTTCTGCAGTGATATCAATGAC
TGCAGACTCAACATTCGAGAAAGAGGTACATGGAAGTTTTCTCTGATAAC
CCCACTGCCCTGACATCCAAAAGAATCAGTCTAAAAAGGAAACCATCAAA
GAGAACTCTTAAAAAAATATGATAGGGATACTGANATGTATCTCTCCACA
ATTTTTGGCTTCTCACTGTAATAAACAAATAAATATAAAATGTGATATAA
AACAACTATTCTAAGAATTAATCACACGAGGAGTTGGCTCTTTGAGAATA
TCAACAAGATAGATAAACCCTTAGCTTTACTCCCTAC

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGATGAAGACACTCTATAAGGGACA
TTCCAGTTTTCCCTTATTTACCGCCTTTTATTAGGTAATGACAGCTCAAA
TTACATTGCTAAATTTAATCAAAACTGGGCCTTTGTGAAATTATCTCTAA
AATAATTAGAATACAAATATATTTATACTTTATGACAATAATTGCAATAT
TTTATTATCTCTATCTGTAATATTGAATTATTAAGTTTAACACTTTATAT
TTAATGCATTATTCTGTGAGCTGAGGTTTTACTAGTATGCTTTATAAATA
CCCCACTCCTGTCTTGATTAAACTAAGTTTCTCACTGTATACACACACAC
ACACACACACACACACACACACACACAAACACATATATATATATATATAT
ATATATATATACACACACACACACACACATTTATATGCGTGTGTGTATAC
AATGACAAACTTGTTTTAATCCCTATATATATATATATACACATATATAT
ATATACTCACATATACATATATATATGTATATATATACACATACACCCAC
ACACGTATACATATACGTATATACATATATACATGTATACCTATATATTC
TTTTATACATATATTTTTATACACATATACACTTATACATATTTACTTAC
CACATTATTTTAGATATTTACATATTCACATATACGCCC

Query= MSMg01no181_l05.b1 MSMg01no181_l05.b1 CHROMAT_FILE:
MSMg01no181_l05.b1 PHD_FILE: MSMg01no181_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:13 2005
         (542 letters)



>mm_chr16_68448614_68449555
          Length = 942

 Score =  775 bits (401), Expect = 0.0
 Identities = 428/437 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgaattgcctcatttcagctcaacagacaattttaccagttacaaaccttat 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaattctatgaactgggtcatttcagctcaacagacaattttaccagttacaaaccttat 378

                                                                       
Query: 65  caataattatgatagctgattaagttttagcaagtcttcaagcccaaatatgattctaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caataattatgatagctgattaagttttagcaagtcttcaagcccaaatatgattctaga 318

                                                                       
Query: 125 ggtagtctgggccaaatacttaataatgggtacatccattaccaaacctgaaatatgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggtagtctgggccaaatacttaataatgggtacatccattaccaaacctgaaatatgagt 258

                                                                       
Query: 185 cctggaattgaaggctaggcaatgaacacttcagtcatgttgaagagggaatagatgtcc 244
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctggaattgaaggccgggcaatgaacacttcagtcatgttgaagagggaatagatgtcc 198

                                                                       
Query: 245 ctgatctcgacagcctcagaggctttgtatggttctgtggttctattacagccatagggc 304
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ctgatcttggcagcctcagaggctttgtatggttctgtggttctattacagccatagggc 138

                                                                       
Query: 305 ttgtttgtgttctatactattgccagaaagtgtgagtaagtccatgacctgagctacagg 364
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctatttgtgttctatactattgccagaaagtgtgagtaagtccatgacctgagctacagg 78

                                                                       
Query: 365 tgattgtaaagagcaaggaagctgcttctgcagtgatatcaatgactgcagactcaacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tgattgtaaagagcaaggaagctgcttctgcagtgatatcaatgactgcagactcaacat 18

                            
Query: 425 tcgagaaagaggtacat 441
           |||||||||||||||||
Sbjct: 17  tcgagaaagaggtacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_l05.g1 MSMg01no181_l05.g1 CHROMAT_FILE:
MSMg01no181_l05.g1 PHD_FILE: MSMg01no181_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:14 2005
         (286 letters)



>mm_chr16_68327523_68328208
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagatgaagacactctataagggacattccagttttcccttatttaccgccttttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 cagagatgaagacactctataagggacattccagttttcccttatttaatgccttttatt 260

                                                                       
Query: 61  aggtaatgacagctcaaattacattgctaaatttaatcaaaactgggcctttgtgaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaatgacagctcaaattacattgctaaatttaatcaaaactgggcctttgtgaaatt 320

                                                                       
Query: 121 atctctaaaataattagaatacaaatatatttatactttatgacaataattgcaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctaaaataattagaatacaaatatatttatactttatgacaataattgcaatattt 380

                                                                       
Query: 181 tattatctctatctgtaatattgaattattaagtttaacactttatatttaatgcattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattatctctatctgtaatattgaattattaagtttaacactttatatttaatgcattat 440

                                                         
Query: 241 tctgtgagctgaggttttactagtatgctttataaataccccactc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtgagctgaggttttactagtatgctttataaataccccactc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)