BAC Information

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BAC

Clone NameMSMg01-181P11
Chromosome16 (Build37)
Map Location 26,043,838 - 26,044,270
singlet/doubletsinglet
Overlap geneLeprel1
Upstream gene5430420C16Rik, Trp63, LOC100043571
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181P11.T7 (MSMg01no181_p11.b1)MSMg01-181P11.TJ (MSMg01no181_p11.g1)
ACCAG374981AG374982
length747740
length of high quality
(start - end)
481 (44 - 524)432 (122 - 553)
definitionCHROMAT_FILE: MSMg01no181_p11.b1 PHD_FILE: MSMg01no181_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:34 2005CHROMAT_FILE: MSMg01no181_p11.g1 PHD_FILE: MSMg01no181_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGTTTACTTCTATACCCCATATTTTTATTGGGTTGTTTAATTTTG
TTGGTGATTAACTTCTTGAGCTCTTTATATACTTTGGATATTAGCTCTCT
ATGAGATGTGGGGTTAGTGAAGATTTTTTCCCAATCATTAGGTTGCCGAT
TTGTGTTATCGACTATGTCCTTTGCCTTATAGAAGTTTTCCAGTTTTATG
AGGTCCCATTTATCAGTTTTTATCTTAGAGCATGAGCCATTGAAGGTCAT
TGAAATTCATAGGAAATTTCCCCCTGTGACGATGAGTTAAAGGTTCTTTT
CCACTTTCTCTTCTATTAGATTCAGTGTATCTGGTGTTATGTTGAGGTAC
TTTATCCACTTGAACTTGAGCTTTGTACAAGGTTATAGATATGGATCAAT
TTTCATTTTTTTACATAAAGACAAGCACCATTATTTGAAGATGCTTTGCT
TATTTCCATTGTATATTTTTGGCATCTTTGTCAAATATCAATTGACAGTA
AGTGGGTGGTTTCATTTCTTGACCTTTCCTCCCATTCCTTTGATCATCAT
GTCTTGTTTCTGTTCCTATACCCTGCCGTTTCTAACCACTATTGCCCCTG
TATTCTTATTTTTGTACTTATTTCCTTCGCCGTTTTCCTCTTATAATTAC
TTTTCGCCTTTTATCCTCCTTTCTTATCGACCATATTTTCCTCCCTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATATATTTAGTGGCTGTTCTGGGTGGGG
GGAGCTTATTTAAAGAACACATGACCTTTAAAACTGTAGCTCATTTCATT
TCCTTTAATTTTTTTTTTAAAAACAATAGTTCCTACCATTTGGCAAGTTG
AAATGTCTCGACTAATTTTCAAAATCCTCAACAATTTAATTGGAGCACAG
AAGAGAACAAAAACCTGCAGAGCTTGTCATTTTAAGAACAAGTATTACTT
TCAAATTGCTTTTCCTCCCTCAGCTCTGACCTGCCAGATTCCAGCCCACA
GTGAATTCTTGCATCTGAGCTGATCCGGCAGAAAGGGAACGCATGCTCAC
GGAGGCCCTTCTCTGTGGGCATGAAGGACAGAAGGACAGGAGGACAGAGG
ACAGCTTCCCTGAAGTGGGGAAGAACATTCCAGAGCCCTGATTCACCCAC
GGTTCTAGTCTCTTCCAGAGGCACCAGACCTTGGAATGACAATGGACGAA
GGTGAAGTACGAGATGGCTCTGGAAAGTACACTGTGTCATCCCAGGTAAC
AGCCAGCTTGAAAATTAAAAGTCGAACAGGGAGCCCAGCATGGTGGTGTA
CGCCTTTAATCTCATTACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT
CCAGGTCTGCCTGTTCTACAAAGTGAGTTCCAGCACACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_p11.g1 MSMg01no181_p11.g1 CHROMAT_FILE:
MSMg01no181_p11.g1 PHD_FILE: MSMg01no181_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:35 2005
         (432 letters)



>mm_chr16_26043638_26044470
          Length = 833

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacctttaaaactgtagctcatttcatttcctttaattttttttt-taaaaacaatagt 59
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tgacctttaaaactgtagctcatttcatttcctttaatttttttttaaaaaaacaatagt 260

                                                                       
Query: 60  tcctaccatttggcaagttgaaatgtctcgactaattttcaaaatcctcaacaatttaat 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaccatttggcaagttgaaatgtctcgactaattttcaaaatcctcaacaatttaat 320

                                                                       
Query: 120 tggagcacagaagagaacaaaaacctgcagagcttgtcattttaagaacaagtattactt 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaacacagaagagaacaaaaacctgcagagcttgtcattttaagaacaagtattactt 380

                                                                       
Query: 180 tcaaattgcttttcctccctcagctctgacctgccagattccagcccacagtgaattctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaattgcttttcctccctcagctctgacctgccagattccagcccacagtgaattctt 440

                                                                       
Query: 240 gcatctgagctgatccggcagaaagggaacgcatgctcacggaggcccttctctgtgggc 299
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatccgggctgatccggcagaaagggaacgcatgctcacggaggcccttctctgtgggc 500

                                                                       
Query: 300 atgaaggacagaaggacaggaggacagaggacagcttccctgaagtggggaagaacattc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaaggacagaaggacaggaggacagaggacagcttccctgaagtggggaagaacattc 560

                                                                       
Query: 360 cagagccctgattcacccacggttctagtctcttccagaggcaccagaccttggaatgac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagccctgattcacccacggttctagtctcttccagaggcaccagaccttggaatgac 620

                        
Query: 420 aatggacgaaggt 432
           |||||||||||||
Sbjct: 621 aatggacgaaggt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space:   348552
Effective search space used:   348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)