BAC Information

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BAC

Clone NameMSMg01-182B22
Chromosome16 (Build37)
Map Location 18,226,217 - 18,226,527
singlet/doubletsinglet
Overlap geneZdhhc8
Upstream geneHic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975
Downstream geneRanbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182B22.T7 (MSMg01no182_b22.b1)MSMg01-182B22.TJ (MSMg01no182_b22.g1)
ACCAG375092AG375093
length754754
length of high quality
(start - end)		343 (66 - 408)313 (41 - 353)
definitionCHROMAT_FILE: MSMg01no182_b22.b1 PHD_FILE: MSMg01no182_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:46 2005CHROMAT_FILE: MSMg01no182_b22.g1 PHD_FILE: MSMg01no182_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTGTTGAGACCCCCATCTCAAAAATAACAAAAC
AAATTTTCACCAGATTTAGCAATGGAGATCAGCCAACTAAAGGAGGCTCT
CGGATCACTATAGTGTTGCCATATGGACTTTTAAAATGTAGCTCGAGAAT
GCAGTTTTGCATTCAGGGAGTTGTGACTCTTCTCTGACCATGAGTGTCTG
AGTTAGGGTTGCTATTGCTGTTATGAAACAAACACCGGGCCAGGCAGTGG
TAGCGCATACTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
CTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGG
GCTATACACACAATCCCTGTCTCGAAAAACCAAAAAAAGAAAAGGAATAA
AAAAAAAAAAAGAAAGAACGAAAAGAAAAAGAAGAAAAGGAAAGAAAAAG
AAACACCAGGACTGAAGGCAAACCAGGGAGAAAAGGGTTTATCTGGCTTA
CACTTCCACATCCATAGTCACCACTGAAGGAAGTCAGGACAGGGGCTCAG
GCAGGGCAGGAACTGGAAGCGGAGCTGATGCCGAGGTTATGGAGGTATGC
TGTTCACTGCCTTGCTCACCATATTCGGCTCATCTCGATTTCCTACTTAT
ACTTTTCCTTTCCCCCACTCTTCATTTATTTTACACATTTCCCTTACCAC
CTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGACATCCTACCTGCTAGAGGGGGAAGCTGCCCTCCTGGCCTGTGGGCA
ATGCCAGTACAGAAGCACACATGCCAGGCCGAGATGGTCTTACCTGCTCC
CCTCCAAGAGACCCCAGCTCAGCATACCCACAGGATGCAGTCCTGCCAGC
ATGCATATGACACCTCTGTGACAAGTATGGCCTTGTCAGGGGCACAAGCA
TGGAAACAGGACACCATGACCAAACAAGGCTCTCCCGGGGGACAGACCTT
TTCCAGGGGCAGATCCCCCCCATAGTAGGGCTATCTTCAGAGTTGAGGTC
CTTTTTTTTTTTCCCACCCCCCCCCCACCTGCTCATTAGGTCCACAAAAG
GGTGTCTCTGCCCCCCCCCCAATAACAATAGACGTTACTTGTGCATGGGC
GCCTGCTGCCTTTAACTGAAATTCACCCAATAATAATTCACACGTTTGTT
ACCTATTTACTCCGACACGCTACTATAACCTTTTTTTACCGTTTTCATCA
TTTTTTATTCCCCTCTTTTTTTCCCACCACTTATCATACCTCCCCTTCTT
ATTTTCCCCCCCTCTTCTTATCTTCTATATTTATCACCCCCATCTTATTT
TTCTATTCGCCCCTTTATCTTTTACCTTTTCCTTTCTTTTTCCCGTGATA
CTGCCCGGCCTCACAAATAATACCCTATAATTTCACATTTTCTTTTTATT
AAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_b22.g1 MSMg01no182_b22.g1 CHROMAT_FILE:
MSMg01no182_b22.g1 PHD_FILE: MSMg01no182_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:46 2005
         (313 letters)



>mm_chr16_18226014_18226727
          Length = 714

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagacatcctacctgctagagggggaagctgccctcctggcctgtgggcaatg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattccagacatcctaactgctagagggggaagctgccctcctggcctgcgggcaatg 263

                                                                       
Query: 64  ccagtacagaagcacacatgccaggccgagatggtcttacctgctcccctccaagagacc 123
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccagtacagaagcagagatgccaggccgagatggtcttacctgctcccctccaagagacc 323

                                                                       
Query: 124 ccagctcagcatacccacaggatgcagtcctgccagcatgcatatgacacctctgtgaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagctcagcatacccacaggatgcagtcctgccagcatgcatatgacacctctgtgaca 383

                                                                       
Query: 184 agtatggccttgtcaggggcacaagcatggaaacaggacaccatgaccaaacaaggctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtatggccttgtcaggggcacaagcatggaaacaggacaccatgaccaaacaaggctct 443

                                                                       
Query: 244 cccgggggacagaccttttccaggggcagatccccccc-atagtagggctatcttcagag 302
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 cccgggggacagaccttttccaggggcagatccccccccatagtagggctatcttcagag 503

                      
Query: 303 ttgaggtcctt 313
           |||||||||||
Sbjct: 504 ttgaggtcctt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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