BAC Information

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BAC

Clone NameMSMg01-182I04
Chromosome16 (Build37)
Map Location 60,905,898 - 60,906,226
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182I04.T7 (MSMg01no182_i04.b1)MSMg01-182I04.TJ (MSMg01no182_i04.g1)
ACCAG375371AG375372
length700800
length of high quality
(start - end)
542 (49 - 590)---
definitionCHROMAT_FILE: MSMg01no182_i04.b1 PHD_FILE: MSMg01no182_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:16 2005CHROMAT_FILE: MSMg01no182_i04.g1 PHD_FILE: MSMg01no182_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGTTGCTCAGTCCACCCCAGAGGTGAACCTACTTCTGATA
TTTTGGTAGATGGATGTTATATCAAAGTGTCCTCCAAATTCAACTCTCCA
GATACATAAAATACTCCAGCTCTCAGATCCAATCAGTCTATTTGTGTAGT
ACACAATAGGTAGTGCATAAACTTGCATCTGATTAAAATACATAGAGCCA
GAGGTCACATATGATACTAGTGAAACAGTACCTATTAGACTGAATAGAAT
CATTGCATTTATGATATCATGGCCCCCATTTTTGAGTGCACAAGAGAAAG
ACCGTCAACATTTTAGCATGGATAGAGAAGGAGTTCATGAGTCTCTGACT
CTATCTGAGGATTTATGCACAGTAAAGGCCTCACAGGAGAAAGTCACTTT
TCTTTAAGGCTATATCATATTTCATTGGATAGCTCCATATGTAGAATTAT
ATAGAAGGCACAAATTAGATTTAATGGGTTACAAAAGTAACCAAAAAAGA
ATATAAAGTTGGAGTTGTGGGGAAATGTAGTGGATATGCAATTCTCCCCC
CTCTCCCCCACTCTTTTATCTCGTCTTTTTCTTTCTTTTTTTTTATTTGA
TAGTGCTGTTTTTCTTTATTTTCTTTTCTTTCTTCTCCCCCTTTACCCCT

ACACAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTATCGTAAAACAATTAAACTTAAAA
GTTATCATCTTCAACCTATCACTCACCGAATCTTCCTTACGTCGTTATTC
GTCACCCACCCCTCCCNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCTCCCTTTTTTTTTCCCCCCCCCCCCCCCCCCATCCACCC
CCCCCAACAACCCCCCCCCCCCCCCCTTCCNCCCCCCCCCCCCCCCCACC
CCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCACCNCTTCCACTCCCCCCCCCCCCCCACCCCCAACCCCCCCCCCCCCC
CCCCTTCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCTCCCC
CTCCCCCCCCCCCCCCCCCCCCCCTCCCCGGCCCCCCCCCCCCCCCCCCC
CCCGCCCCCTCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCTCCCCCC
CCCCCTCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCACCCCCCCCACCCCCCCCCCCCCCCCTCGCCCCACCCCCCCCCCCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_i04.b1 MSMg01no182_i04.b1 CHROMAT_FILE:
MSMg01no182_i04.b1 PHD_FILE: MSMg01no182_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:16 2005
         (542 letters)



>mm_chr16_60905287_60906228
          Length = 942

 Score =  598 bits (309), Expect = e-175
 Identities = 324/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 212 tatgatactagtgaaacagtacctattagactgaatagaatcattgcatttatgatatca 271
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 940 tatgatactagtgaaacagtacctattagactgaataggatcattgcatttatgatatca 881

                                                                       
Query: 272 tggcccccatttttgagtgcacaagagaaagaccgtcaacattttagcatggatagagaa 331
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 880 tggcccccatttttgagtgcacaagagaaagacagtcaacattttagcatggatagagaa 821

                                                                       
Query: 332 ggagttcatgagtctctgactctatctgaggatttatgcacagtaaaggcctcacaggag 391
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 820 ggagttcatgagtctctgactctatctgaggatttatggacagtaaaggcctcacaggag 761

                                                                       
Query: 392 aaagtcacttttctttaaggctatatcatatttcattggatagctccatatgtagaatta 451
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 760 aaagtcacttttctttaaggctatatcatatttcagtggatagctccatatgtagaatta 701

                                                                       
Query: 452 tatagaaggcacaaattagatttaatgggttacaaaagtaaccaaaaaagaatataaagt 511
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 700 tatagaaggcacaaattagattcaatgggttacaaaagtaaccaaaaaagaatataaagt 641

                                        
Query: 512 tggagttgtggggaaatgtagtggatatg 540
           |||||||||||||||||||||||||||||
Sbjct: 640 tggagttgtggggaaatgtagtggatatg 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)