Query= MSMg01no182_o19.b1 MSMg01no182_o19.b1 CHROMAT_FILE:
MSMg01no182_o19.b1 PHD_FILE: MSMg01no182_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:48 2005
(550 letters)
>mm_chr16_9602762_9603711
Length = 950
Score = 951 bits (492), Expect = 0.0
Identities = 531/544 (97%)
Strand = Plus / Plus
Query: 5 ggaattcacacagccattcctcatttggacaaagcaagcctgggctaaaaatgacataaa 64
||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 ggaatccacacagccattgctcatttggacaaagcaagcctgggctaaaaattacataaa 264
Query: 65 ttagccactcagcgaacctttctccagtccctcctctctgccgctccctctccttgatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagccactcagcgaacctttctccagtccctcctctctgccgctccctctccttgatct 324
Query: 125 gtcttctcctttccatctcattttccattcctttcccctgcccactctcttctgacctca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcttctcctttccatctcattttccattcctttcccctgcccactctcttctgacctca 384
Query: 185 cagtctccctcccctttctttttgcccatcatgaacctgtgctttctcccctacccactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtctccctcccctttctttttgcccatcatgaacctgtgctttctcccctacccactc 444
Query: 245 atctggccccggtttgtcctcttttgggcctccctttaacagttctggtttttctgtagt 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 atctggcctcggtttgtcctcttttgggcctccctttaacagttctggtttttctatagt 504
Query: 305 ttctgatagactcagcttttggtttcctggactctcccgtaagtcacttcagtatggaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctgatagactcagcttttggtttcctggactctcccgtaagtcacttcagtatggaga 564
Query: 365 agaggcccccccaccctctgctctgtctcaccctctgtccaccactccgtgcttcctttg 424
||||| | |||||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct: 565 agaggttctagcaccctctgcactgcctcaccctctgtccatcactccgtgcttcctttg 624
Query: 425 cacatatctttaagtgggatgagactctagataacccaggccagggtgcatggaacttca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacatatctttaagtgggatgagactctagataacccaggccagggtgcatggaacttca 684
Query: 485 tctgcaaaaggctaaagaataaatctgtagggtctggagtttccattgaagtctcccggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgcaaaaggctaaagaataaatctgtagggtctggagtttccattgaagtctcccggt 744
Query: 545 cttg 548
||||
Sbjct: 745 cttg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_o19.g1 MSMg01no182_o19.g1 CHROMAT_FILE:
MSMg01no182_o19.g1 PHD_FILE: MSMg01no182_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:48 2005
(545 letters)
>mm_chr16_9757103_9758047
Length = 945
Score = 984 bits (509), Expect = 0.0
Identities = 536/545 (98%)
Strand = Plus / Minus
Query: 1 cagtgtattcatctcagctgccattttgcattctgctaagcccatgcttcatcttttacc 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 745 cagtgtattcatctcagctgccattttgcattctgctaagcccacgcttcatcttttatc 686
Query: 61 tagtcatccccagttgatgggtatttagactattgataaggacaggatctggcatccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtcatccccagttgatgggtatttagactattgataaggacaggatctggcatccagt 626
Query: 121 cagtgggcagataaggctgaacccagtatatgagtctgctcagtgggactcgagactctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgggcagataaggctgaacccagtatatgagtctgctcagtgggactcgagactctg 566
Query: 181 aagttggtggccccttgcttcattttacttttccaatacatttaaagctgaatgaagtct 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagttggtggccccttgcttcaatttacttttccaatacatttaaagctgaatgaagtct 506
Query: 241 taattggcaaagcttcttgaggacagatagctttccttagttttacagacagttgcagct 300
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taattggcaaagcatcatgaggacagatagctttccttagttttacagacagttgcagct 446
Query: 301 gaattcacacctggatctcaggaaggctcatcacgccctgctttggctaactgagacccc 360
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 gaattcacacctggatctcaggaaggctcatcatgaactgctttggctaactgagacccc 386
Query: 361 cttggtgctatcccagccctgactctgcagtctacaaggttattgcctagaatcttagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttggtgctatcccagccctgactctgcagtctacaaggttattgcctagaatcttagag 326
Query: 421 ttcctgcagttagggtattggaacgatgcactgtagtccatggtgtggagggggcagctt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcctgcagttagggtattggaacaatgcactgtagtccatggtgtggagggggcagctt 266
Query: 481 gcagggtatagagtattctggaacttaccctagacccgtttctgtctttgtcatttcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagggtatagagtattctggaacttaccctagacccgtttctgtctttgtcatttcaga 206
Query: 541 cggtg 545
|||||
Sbjct: 205 cggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
