BAC Information

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BAC

Clone NameMSMg01-182O19
Chromosome16 (Build37)
Map Location 9,602,966 - 9,757,847
singlet/doubletdoublet
Overlap geneGrin2a
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182O19.T7 (MSMg01no182_o19.b1)MSMg01-182O19.TJ (MSMg01no182_o19.g1)
ACCAG375669AG375670
length742689
length of high quality
(start - end)
550 (45 - 594)545 (84 - 628)
definitionCHROMAT_FILE: MSMg01no182_o19.b1 PHD_FILE: MSMg01no182_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:48 2005CHROMAT_FILE: MSMg01no182_o19.g1 PHD_FILE: MSMg01no182_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,602,966 - 9,603,509)(9,757,303 - 9,757,847)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATCCGCGG
AATTCACACAGCCATTCCTCATTTGGACAAAGCAAGCCTGGGCTAAAAAT
GACATAAATTAGCCACTCAGCGAACCTTTCTCCAGTCCCTCCTCTCTGCC
GCTCCCTCTCCTTGATCTGTCTTCTCCTTTCCATCTCATTTTCCATTCCT
TTCCCCTGCCCACTCTCTTCTGACCTCACAGTCTCCCTCCCCTTTCTTTT
TGCCCATCATGAACCTGTGCTTTCTCCCCTACCCACTCATCTGGCCCCGG
TTTGTCCTCTTTTGGGCCTCCCTTTAACAGTTCTGGTTTTTCTGTAGTTT
CTGATAGACTCAGCTTTTGGTTTCCTGGACTCTCCCGTAAGTCACTTCAG
TATGGAGAAGAGGCCCCCCCACCCTCTGCTCTGTCTCACCCTCTGTCCAC
CACTCCGTGCTTCCTTTGCACATATCTTTAAGTGGGATGAGACTCTAGAT
AACCCAGGCCAGGGTGCATGGAACTTCATCTGCAAAAGGCTAAAGAATAA
ATCTGTAGGGTCTGGAGTTTCCATTGAAGTCTCCCGGTCTTGCTCCTGTA
TTGTGAGGAATGCTGTGGCTAAGATCTGATGCTCAGATGTATTTGCCTTT
CAACAAATCTCCCTTTTTATATAGTGTAACGAACTAGACCACGTATAATT
CCCAAAACTGATCTGATCCCACAAAATCCTAAATATCACCCA
AAAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGTATTCATCTCAG
CTGCCATTTTGCATTCTGCTAAGCCCATGCTTCATCTTTTACCTAGTCAT
CCCCAGTTGATGGGTATTTAGACTATTGATAAGGACAGGATCTGGCATCC
AGTCAGTGGGCAGATAAGGCTGAACCCAGTATATGAGTCTGCTCAGTGGG
ACTCGAGACTCTGAAGTTGGTGGCCCCTTGCTTCATTTTACTTTTCCAAT
ACATTTAAAGCTGAATGAAGTCTTAATTGGCAAAGCTTCTTGAGGACAGA
TAGCTTTCCTTAGTTTTACAGACAGTTGCAGCTGAATTCACACCTGGATC
TCAGGAAGGCTCATCACGCCCTGCTTTGGCTAACTGAGACCCCCTTGGTG
CTATCCCAGCCCTGACTCTGCAGTCTACAAGGTTATTGCCTAGAATCTTA
GAGTTCCTGCAGTTAGGGTATTGGAACGATGCACTGTAGTCCATGGTGTG
GAGGGGGCAGCTTGCAGGGTATAGAGTATTCTGGAACTTACCCTAGACCC
GTTTCTGTCTTTGTCATTTCAGACGGTGGGGTGTAGAGAATGTATCCATA
TTCCACTTTATTTTAATTCCTTAACTCACTTTTTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_o19.b1 MSMg01no182_o19.b1 CHROMAT_FILE:
MSMg01no182_o19.b1 PHD_FILE: MSMg01no182_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:48 2005
         (550 letters)



>mm_chr16_9602762_9603711
          Length = 950

 Score =  951 bits (492), Expect = 0.0
 Identities = 531/544 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcacacagccattcctcatttggacaaagcaagcctgggctaaaaatgacataaa 64
           ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 ggaatccacacagccattgctcatttggacaaagcaagcctgggctaaaaattacataaa 264

                                                                       
Query: 65  ttagccactcagcgaacctttctccagtccctcctctctgccgctccctctccttgatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagccactcagcgaacctttctccagtccctcctctctgccgctccctctccttgatct 324

                                                                       
Query: 125 gtcttctcctttccatctcattttccattcctttcccctgcccactctcttctgacctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcttctcctttccatctcattttccattcctttcccctgcccactctcttctgacctca 384

                                                                       
Query: 185 cagtctccctcccctttctttttgcccatcatgaacctgtgctttctcccctacccactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtctccctcccctttctttttgcccatcatgaacctgtgctttctcccctacccactc 444

                                                                       
Query: 245 atctggccccggtttgtcctcttttgggcctccctttaacagttctggtttttctgtagt 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 atctggcctcggtttgtcctcttttgggcctccctttaacagttctggtttttctatagt 504

                                                                       
Query: 305 ttctgatagactcagcttttggtttcctggactctcccgtaagtcacttcagtatggaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctgatagactcagcttttggtttcctggactctcccgtaagtcacttcagtatggaga 564

                                                                       
Query: 365 agaggcccccccaccctctgctctgtctcaccctctgtccaccactccgtgcttcctttg 424
           |||||  |   |||||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct: 565 agaggttctagcaccctctgcactgcctcaccctctgtccatcactccgtgcttcctttg 624

                                                                       
Query: 425 cacatatctttaagtgggatgagactctagataacccaggccagggtgcatggaacttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacatatctttaagtgggatgagactctagataacccaggccagggtgcatggaacttca 684

                                                                       
Query: 485 tctgcaaaaggctaaagaataaatctgtagggtctggagtttccattgaagtctcccggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgcaaaaggctaaagaataaatctgtagggtctggagtttccattgaagtctcccggt 744

               
Query: 545 cttg 548
           ||||
Sbjct: 745 cttg 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no182_o19.g1 MSMg01no182_o19.g1 CHROMAT_FILE:
MSMg01no182_o19.g1 PHD_FILE: MSMg01no182_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:48 2005
         (545 letters)



>mm_chr16_9757103_9758047
          Length = 945

 Score =  984 bits (509), Expect = 0.0
 Identities = 536/545 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtattcatctcagctgccattttgcattctgctaagcccatgcttcatcttttacc 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 745 cagtgtattcatctcagctgccattttgcattctgctaagcccacgcttcatcttttatc 686

                                                                       
Query: 61  tagtcatccccagttgatgggtatttagactattgataaggacaggatctggcatccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtcatccccagttgatgggtatttagactattgataaggacaggatctggcatccagt 626

                                                                       
Query: 121 cagtgggcagataaggctgaacccagtatatgagtctgctcagtgggactcgagactctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgggcagataaggctgaacccagtatatgagtctgctcagtgggactcgagactctg 566

                                                                       
Query: 181 aagttggtggccccttgcttcattttacttttccaatacatttaaagctgaatgaagtct 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagttggtggccccttgcttcaatttacttttccaatacatttaaagctgaatgaagtct 506

                                                                       
Query: 241 taattggcaaagcttcttgaggacagatagctttccttagttttacagacagttgcagct 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taattggcaaagcatcatgaggacagatagctttccttagttttacagacagttgcagct 446

                                                                       
Query: 301 gaattcacacctggatctcaggaaggctcatcacgccctgctttggctaactgagacccc 360
           ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||
Sbjct: 445 gaattcacacctggatctcaggaaggctcatcatgaactgctttggctaactgagacccc 386

                                                                       
Query: 361 cttggtgctatcccagccctgactctgcagtctacaaggttattgcctagaatcttagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttggtgctatcccagccctgactctgcagtctacaaggttattgcctagaatcttagag 326

                                                                       
Query: 421 ttcctgcagttagggtattggaacgatgcactgtagtccatggtgtggagggggcagctt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcctgcagttagggtattggaacaatgcactgtagtccatggtgtggagggggcagctt 266

                                                                       
Query: 481 gcagggtatagagtattctggaacttaccctagacccgtttctgtctttgtcatttcaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagggtatagagtattctggaacttaccctagacccgtttctgtctttgtcatttcaga 206

                
Query: 541 cggtg 545
           |||||
Sbjct: 205 cggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)