BAC Information

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BAC

Clone NameMSMg01-182P13
Chromosome16 (Build37)
Map Location 91,410,592 - 91,535,543
singlet/doubletdoublet
Overlap geneIl10rb, Ifnar1, LOC665939
Upstream geneHunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2
Downstream geneLOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182P13.T7 (MSMg01no182_p13.b1)MSMg01-182P13.TJ (MSMg01no182_p13.g1)
ACCAG375705AG375706
length805730
length of high quality
(start - end)
297 (46 - 342)252 (76 - 327)
definitionCHROMAT_FILE: MSMg01no182_p13.b1 PHD_FILE: MSMg01no182_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:51 2005CHROMAT_FILE: MSMg01no182_p13.g1 PHD_FILE: MSMg01no182_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,410,592 - 91,410,884)(91,535,292 - 91,535,543)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTGTCCCTGCTGGATATCACGCCTCCTACTCCCTGCCTCAGT
TCATTGGCCATAAGCTTTTTTATTGACAGGCAATACTTATAAGAGATATG
CTCTACAGCAAAATGTGCATATATATTAAGTGGGAGAGGCAGATGGTACA
AGACTGGGTTCTCAGTAGTCCTTACCTACCTTTTGCAAAGCTCTGGGCAC
CAATAACAATGGAGTGAGCCACAATGTGGTCCCTAGAGCCCTAAAGGCAA
CAGAACTGAGTGTATTGAGGGCGCTTGCTGCTTTTGCAGAGAACTCACGT
TTAGATCCCAGTTCCTTCGCTCCNAGACTGNANCCCATATGTAACTTCAG
TCCCATTGGATTCCCCCCCCCCTTTCAAAAAAAAAAAAGATTCTGTGCTC
CGTGCACGTGCGTGTTTAAATCCCCACTCTTATATCCCCCTTTGCTCTAA
CCCCCCCCTCCTCCACCCTACTATTACCTATTTTCAATTGTTATCCCCCC
CCCCACCCGCCCCTCATATATTATTTTATGCTTTCCCGTCGCCCCTCTCA
TACCCTTTTTCTCCTCCTCCTCCCTTTTCTCCCGTCACGAATTATATGTA
TTTTCTCTCGTCCCCCTACTTCCCTCTTTCACCAGAAAGATTCTTACTCT
TTTGTCCACGTGAATTATTACTTTTCTATATTTCTTTACTCTCCCTTCAT
TTTTTTTCTTCCCCCCCCCCCCCGCTATTTTTTTCCTCCGCCTTTTTTTT
TTCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATGCTGTCCACTTTGCTCTT
TGAGATAGCCCTAAGACTTTATTGGTTTTACATACCATGCATGTATGCCC
GTCCACACGGATGTACGGATACCACATGGGCTGGGTTGGAATTGAGTGGA
TGGAGGCTCGAGAGCAGGTGGCGTCACTGCCAGTTAATGGCACTGGCTAG
TTTCCTTTGGACTTGTAGTGACACTGCAGAGGTGTGTGGTGTGTGAGTCA
CAGGGCCCAGGAGAGTCCTGTCTCCTGTAAGGGAGGGGCCCCTGTAGGGA
TTGATTTTTTTTTTTCCCCCCCCCCCCCCCCCTCTTAATATTTATTCCAT
CATTTTCTAGCGTTTTTGTCCCCCCAAATAAATAAAAAGTGNTGTCTGGG
GGGGGTTGGTTGCCCTACATATATTGTTTAATTGATATTTCTTTTACGTG
CCCCCCCCACTTTACTTTTTTTCCCTCCCACTTCTCCTTATTTTCTAATA
TCTTCTTTTTATCTCCCCCCTCCTTTTTTTCCCTTTTTTTTCCTCCCCCT
TTTTTTCTTTTCTCCCTTTCTCCCTCCCCCTTCGTTTCCTTTTCCTTTAT
ATCGTCCTTTCATCTTCTCTTACTTTCTTCTTTTCCCTTTCCCCCTTTCC
CTTTTCCCTCCCCTTTTACCCCTCCCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_p13.b1 MSMg01no182_p13.b1 CHROMAT_FILE:
MSMg01no182_p13.b1 PHD_FILE: MSMg01no182_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:51 2005
         (297 letters)



>mm_chr16_91410388_91411084
          Length = 697

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctgtccctgctggatatcacgcctcctactccctgcctcagttcattggcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctgtccctgctggatatcacgcctcctactccctgcctcagttcattggcc 264

                                                                       
Query: 65  ataagcttttttattgacaggcaatacttataagagatatgctctacagcaaaatgtgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagcttttttattgacaggcaatacttataagagatatgctctacagcaaaatgtgca 324

                                                                       
Query: 125 tatatattaagtgggagaggcagatggtacaagactgggttctcagtagtccttacctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatatattaagtgggagaggcagatggtacaagactgggttctcagtagtccttacctac 384

                                                                       
Query: 185 cttttgcaaagctctgggcaccaataacaatggagtgagccacaatgtggtccctagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttttgcaaagctctgggcaccaataacaatggagtgagccacaatgtggtccctagagc 444

                                                                
Query: 245 cctaaaggcaacagaactgagtgtattgagggcgcttgctgcttttgcagaga 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctaaaggcaacagaactgagtgtattgagggcgcttgctgcttttgcagaga 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no182_p13.g1 MSMg01no182_p13.g1 CHROMAT_FILE:
MSMg01no182_p13.g1 PHD_FILE: MSMg01no182_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:52 2005
         (252 letters)



>mm_chr16_91535092_91535743
          Length = 652

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaatgctgtccactttgctctttgagatagccctaagactttattggttttacatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caggaatgctgtccactttgctctttgagatagccctaagactttattggttttacatac 393

                                                                       
Query: 61  catgcatgtatgcccgtccacacggatgtacggataccacatgggctgggttggaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 catgcatgtatgcccgtccacacggatgtacggataccacatgggctgggttggaattga 333

                                                                       
Query: 121 gtggatggaggctcgagagcaggtggcgtcactgccagttaatggcactggctagtttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtggatggaggctcgagagcaggtggcgtcactgccagttaatggcactggctagtttcc 273

                                                                       
Query: 181 tttggacttgtagtgacactgcagaggtgtgtggtgtgtgagtcacagggcccaggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttggacttgtagtgacactgcagaggtgtgtggtgtgtgagtcacagggcccaggagag 213

                       
Query: 241 tcctgtctcctg 252
           ||||||||||||
Sbjct: 212 tcctgtctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)