BAC Information

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BAC

Clone NameMSMg01-183A03
Chromosome16 (Build37)
Map Location 70,294,509 - 70,438,826
singlet/doubletdoublet
Overlap geneGbe1
Upstream geneSpeer2, EG664930
Downstream geneD16Ertd519e, LOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183A03.T7 (MSMg01no183_a03.b1)MSMg01-183A03.TJ (MSMg01no183_a03.g1)
ACCAG375732AG375733
length719723
length of high quality
(start - end)		480 (46 - 525)651 (73 - 723)
definitionCHROMAT_FILE: MSMg01no183_a03.b1 PHD_FILE: MSMg01no183_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:54 2005CHROMAT_FILE: MSMg01no183_a03.g1 PHD_FILE: MSMg01no183_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,294,509 - 70,294,968)(70,438,176 - 70,438,826)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACTTTCTTCCTTTTGTGGGAAAACTCAAGTGAGTATAGATAGA
AAAGAAGCAGATGTGAAAAATGAGAATGATGAGAGATGTTATTTAGATGG
CTGATTTTCTACATATTCACACTGTATTAGAACTCTAGTATTAAAATCAA
GAATAAGCTTGGGTTTAGGGAAATATTCGCTTAACCCCAAGGAGAAATCT
CTAATAGTCACATAGCAAATTATAGAAAGTTATTTTCTTTCTTTCTTTCC
TTCCTTCTTTCCTTTCTGCCTTCCCTCCTTCCTCCATTTCCTTTTCATCC
TTCTTCTTTTGTTTGTTTTCATGTTCATTTCTTTTGTCTTGCCTCCCTTT
CCTTCTGCATTTACTGAAAACCTGAGCTTGGCAAAGCTTTAAAAATGCAA
CAATAAAAGTGACTTCATCTCATTCTTTGTGGCATTTATAATGTATCAGA
GAATGTATACACACACACACACACACACACATACACATTTACGCATTCTA
TCATTCTCCCACTCTCACAGTATCATACAAGGCAATTGCAGTGGATATGT
GATCTACTCCAGCGTTCGGCAGATCTGTCTTTTTATTAGACTATTAACAT
ACGTTTACATATTACTTTGCAAATTGATTTTGACCTTCTAGCTAACGGAA
TATTTACTCTCCCTTGAAG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAATGGCCAGTGAAGAACTACTGAAAAT
AAACCAAGTAAAAGATTTGGCAACATGGAGCAGAGGAGCACAGGGGCAGG
TGAGCAGCCAGATTTAGGCTACAATATGGAGTGGCAGACGGCTTAAGGTT
TATAATAAATAGAGTACAGACACGGACAGAAATGGAATAGAAACGTATAA
TGCAAACAGAGATCCAGGCTTGAACAGTTAGAAAATCTCACTTATTGAGT
TAGAAAAATGAGGAAGAAGGACCACGGGGGACATGGTGGGGCACTTAATC
TGTAACACTGAAGACAAGTATTAGAGATCCAGAGTACTGAGGAATATAGC
CTACATGAACCAGAAACTTCAACTTGGGAGTTTGCACTGGAAGCGTATCA
ATGCCAAAGGAAGGGATAGAATCCGAATGGAACAGAACTGAAATGTTTCC
TGTTCAGGAGAGAGATGCAGGTGGGAGAGCAGAGGAAGGAGCAAAGGAAT
ATGGGCAAACAGTGAGGGGAGAGAGGCCATGGCAGGATACATTGTTCAGG
AATTAAAGAAAAAAAAAAGTCTTCCAAGGAGGTGGAAGGATGTGACTGGG
TCAAATGATTCTCACAGGTAGAGGTAACCAAGAAAAGCCACTGTGTGTCA
GGCGTGAAGGTCACCAGTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_a03.b1 MSMg01no183_a03.b1 CHROMAT_FILE:
MSMg01no183_a03.b1 PHD_FILE: MSMg01no183_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:54 2005
         (480 letters)



>mm_chr16_70294305_70295184
          Length = 880

 Score =  851 bits (440), Expect = 0.0
 Identities = 455/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactttcttccttttgtgggaaaactcaagtgagtatagatagaaaagaagca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactttcatccttttgtgggaaaactcaagtgagtatagatagaaaagaagca 264

                                                                       
Query: 65  gatgtgaaaaatgagaatgatgagagatgttatttagatggctgattttctacatattca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgtgaaaaatgagaatgatgagagatgttatttagatggctgattttctacatattca 324

                                                                       
Query: 125 cactgtattagaactctagtattaaaatcaagaataagcttgggtttagggaaatattcg 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtgtattagaactctagtattaaaatcaagaataagcttgggtttagggaaatattcg 384

                                                                       
Query: 185 cttaaccccaaggagaaatctctaatagtcacatagcaaattatagaaagttattttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaaccccaaggagaaatctctaatagtcacatagcaaattatagaaagttattttctt 444

                                                                       
Query: 245 tctttctttccttccttctttcctttctgccttccctccttcctccatttccttttcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttctttccttccttctttcctttctgccttccctccttcctccatttccttttcatc 504

                                                                       
Query: 305 cttcttcttttgtttgttttcatgttcatttcttttgtcttgcctccctttccttctgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttcttcttttgtttgttttcatgttcatttcttttgtcttgcctccctttccttctgca 564

                                                                       
Query: 365 tttactgaaaacctgagcttggcaaagctttaaaaatgcaacaataaaagtgacttcatc 424
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttactgaatatctgagcttggcaaagctttaaaaatgcaacaataaaagtgacttcatc 624

                                                   
Query: 425 tcattctttgtggcatttataatgtatcagagaatgtata 464
           ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tcattctttgtggcatttataatgtatcagagaatatata 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_a03.g1 MSMg01no183_a03.g1 CHROMAT_FILE:
MSMg01no183_a03.g1 PHD_FILE: MSMg01no183_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:54 2005
         (651 letters)



>mm_chr16_70437976_70439026
          Length = 1051

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatggccagtgaagaactactgaaaataaaccaagtaaaagatttggcaacatggagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aaatggccagtgaagaactactgaaaataaaccaagtaaaagatttggcaacatggagca 792

                                                                       
Query: 61  gaggagcacaggggcaggtgagcagccagatttaggctacaatatggagtggcagacggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaggagcacaggggcaggtgagcagccagatttaggctacaatatggagtggcagacggc 732

                                                                       
Query: 121 ttaaggtttataataaatagagtacagacacggacagaaatggaatagaaacgtataatg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttaaggtttataataagtagagtacagacacggacagaaatggaatagaaacgtataatg 672

                                                                       
Query: 181 caaacagagatccaggcttgaacagttagaaaatctcacttattgagttagaaaaatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 caaacagagatccaggcttgaacagttagaaaatctcacttattgagttagaaaaatgag 612

                                                                       
Query: 241 gaagaaggaccacgggggacatggtggggcacttaatctgtaacactgaagacaagtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaagaaggaccacgggggacatggtggggcacttaatctgtaacactgaagacaagtatt 552

                                                                       
Query: 301 agagatccagagtactgaggaatatagcctacatgaaccagaaacttcaacttgggagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agagatccagagtactgaggaatatagcctacatgaaccagaaacttcaacttgggagtt 492

                                                                       
Query: 361 tgcactggaagcgtatcaatgccaaaggaagggatagaatccgaatggaacagaactgaa 420
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 tgcactggaagcgtatcaaagccaaaggaagggatagaaaccgaatggaacagaactgaa 432

                                                                       
Query: 421 atgtttcctgttcaggagagagatgcaggtgggagagcagaggaaggagcaaaggaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgtttcctgttcaggagagagatgcaggtgggagagcagaggaaggagcaaaggaatat 372

                                                                       
Query: 481 gggcaaacagtgaggggagagaggccatggcaggatacattgttcaggaattaaagaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gggcaaacagtgaggggagagaggccatggcaggatacattgttcaggaattaaagaaaa 312

                                                                       
Query: 541 aaaaaagtcttccaaggaggtggaaggatgtgactgggtcaaatgattctcacaggtaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaaaaagtcttccaaggaggtggaaggatgtgactgggtcaaatgattctcacaggtaga 252

                                                              
Query: 601 ggtaaccaagaaaagccactgtgtgtcaggcgtgaaggtcaccagtggctt 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggtaaccaagaaaagccactgtgtgtcaggcgtgaaggtcaccagtggctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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