BAC Information

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BAC

Clone NameMSMg01-184F02
Chromosome16 (Build37)
Map Location 26,732,181 - 26,732,863
singlet/doubletsinglet
Overlap genenone
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184F02.T7 (MSMg01no184_f02.b1)MSMg01-184F02.TJ (MSMg01no184_f02.g1)
ACCAG376641AG376642
length746731
length of high quality
(start - end)
688 (56 - 743)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no184_f02.b1 PHD_FILE: MSMg01no184_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:38 2005CHROMAT_FILE: MSMg01no184_f02.g1 PHD_FILE: MSMg01no184_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCATTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATTTCACACCGTGATGAACAAAAGCCCGAAGCAGT
GCCTTTGATAGAACACTGCATCTGTAATGAACGGGAAGTGGGAGAAAGAA
ATAGGCAAGGCTCTTTTATTTTGCTCTCAATGATAATTGTCATGGTATTT
AATTCACAGTAACATTAGTGGAAAAATTATATATGTTAGTCACTACACTA
AGTGCTCAAATTAGAGACCTAATAGAATTTCTTCTCAGTGAAACTAGAAG
AAGACAGCAGGCAAAGTAGGCACTAGGAAGTTTATATTTCAGTGTCAGGA
GAATTATGAATTATACATGTGTAATGAGTAACATCTTGCTTGCCTGGGGA
AAAATTCATAGATTTGGTAGCCTTTGAACTGAACCTGGAGCATTCTAAGA
GCCCTTGTATAAGGAAGAAATGGAATAGATATTCTAAGCTTTTTGTTAGA
AATGCAGATAGATAACCATGAAAACATAAGGCATGTTACAGAAATATAAT
CAATTATGTTACATACCTTAAATTGTTGACATTTTGGAGAGAATAGGAAC
AAAGATTTTAAGTGATTTTTGGAATGTAATGACTTTGCAGTTATTGTCCT
GTAAGAGGTCCTTTGCACACTCTTTGGCTATCTGGATTAGGATCACCAGG
ATGAGTGTAGACACCAACTCAAGTCCTTTTTGTCAACTTTGCTCCC
TCTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGTCAAATATTTTTTAAA
TATTTCAAAATATATTTGCTATGTTCAGGGTGCTCTTTAAAATCCATAAA
CACAGGGCTCTCATCTTCAATTATTAACAAGCCACTATATGGCTGAGTAC
TTTGATCCTATCAATCAGGAGGCAGAGTCAAAGGCAGATAGATGGCTATG
AGTTCAAGGCTAGCCTGATGTACATAGTGAGTTCCAGCCAACCATGTTTA
CACAGTAAGACTCAGTCTAAGAAAATAAAATAATAATGATGATACTATTA
TTATCATTATTAAGTTAGCAATTGGCCCTCCCAAAATAGAAGGTATAATA
ATATCTATCCAGCACTCACAAGATATAAGTTGCCAATTGCTTCATTTTTG
CTTGAGGTCTCACCTTCAACTAGGTAAGAACTGATGTTAGGCAAACTATC
TTCCAGTTGACTGGTTAGAGAGAAGACATTTAAACATGGACTCTGTAACT
CTGGACCTGAGGTTATATTTGCTATCCAGAGAACTTTGCACCTCAAATTC
TTGAGCCACTCTGATTAAAGATTTATGCCATTGAATTGATTAATTAACTA
TTTGGAGTGTCCACAACTGGATCTGATTCTGAGCAATCTTTGTCATTCAT
ACAGTACAAGGTTGATTCCTAAAAGTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_f02.b1 MSMg01no184_f02.b1 CHROMAT_FILE:
MSMg01no184_f02.b1 PHD_FILE: MSMg01no184_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:38 2005
         (688 letters)



>mm_chr16_26731978_26733063
          Length = 1086

 Score = 1272 bits (658), Expect = 0.0
 Identities = 678/686 (98%), Gaps = 4/686 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttcacaccgtgatgaacaaaagcccgaagcagtgcctttgatagaacactg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ggaattcatttcacaccgtgatgaacaaaagcccgaagcagtgcctttgatagaacactg 827

                                                                       
Query: 64  catctgtaatgaacgggaagtgggagaaagaaataggcaaggctcttttattttgctctc 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 catctgtaatgaaagggaagtgggagaaagaaataggcaaggctcttttattttgctctc 767

                                                                       
Query: 124 aatgataattgtcatggtatttaattcacagtaacattagtggaaaaattatatatgtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aatgataattgtcatggtatttaattcacagtaacattagtggaaaaattatatatgtta 707

                                                                       
Query: 184 gtcactacactaagtgctcaaattagagacctaatagaatttcttctcagtgaaactaga 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 706 gtcactacactaagtgctcaaattagagacctaatagaatttcttctcagtgaaact--- 650

                                                                       
Query: 244 agaagacagcaggcaaagtaggcactaggaagtttatatttcagtgtcaggagaattatg 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 649 agaagacagcaggcaaagtaggcactaggaagtttatatttcagtatcaggagaattatg 590

                                                                       
Query: 304 aattatacatgtgtaatgagtaacatcttgcttgcct-ggggaaaaattcatagatttgg 362
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 589 aattatacatgtgtaaggagtaacatcttgcttgcctgggggaaaaattcatagatttgg 530

                                                                       
Query: 363 tagcctttgaactgaacctggagcattctaagagcccttgtataaggaagaaatggaata 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tagcctttgaactgaacctggagcattctaagagcccttgtataaggaagaaatggaata 470

                                                                       
Query: 423 gatattctaagctttttgttagaaatgcagatagataaccatgaaaacataaggcatgtt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gatattctaagctttttgttagaaatgcagatagataaccatgaaaacataaggcatgtt 410

                                                                       
Query: 483 acagaaatataatcaattatgttacataccttaaattgttgacattttggagagaatagg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acagaaatataatcaattatgttacataccttaaattgttgacattttggagagaatagg 350

                                                                       
Query: 543 aacaaagattttaagtgatttttggaatgtaatgactttgcagttattgtcctgtaagag 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 349 aacaaagattttaagtgatttttggaatgtaatgactttgcagttattgtcctgtaagat 290

                                                                       
Query: 603 gtcctttgcacactctttggctatctggattaggatcaccaggatgagtgtagacaccaa 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtcctttgcacactctttggctatctggattaggatcaccaggatgagtgtagacaccaa 230

                                     
Query: 663 ctcaagtcctttttgtcaactttgct 688
           ||||||||||||||||||||||||||
Sbjct: 229 ctcaagtcctttttgtcaactttgct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space:   729528
Effective search space used:   729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)