BAC Information

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BAC

Clone NameMSMg01-185C10
Chromosome16 (Build37)
Map Location 48,733,864 - 48,734,197
singlet/doubletsinglet
Overlap geneTrat1
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1
Downstream geneEG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185C10.T7 (MSMg01no185_c10.b1)MSMg01-185C10.TJ (MSMg01no185_c10.g1)
ACCAG377229AG377230
length674729
length of high quality
(start - end)
309 (4 - 312)334 (396 - 729)
definitionCHROMAT_FILE: MSMg01no185_c10.b1 PHD_FILE: MSMg01no185_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:47 2005CHROMAT_FILE: MSMg01no185_c10.g1 PHD_FILE: MSMg01no185_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGATCCGCGGAATTCTTTGTTTAGCTTTAAGCCCCATTTTTAATAGGGT
TATTTGGTTTTCTGGAGGCCAACTTCTTGAATTCTTTATATATATTGGAT
ATTAGCCTCCTATGGGATTTAGGATTGGTAAAGATCCTTTCCAAATCTGT
TGGCTGCCATTTTGTCTTATTGACGGTATCCTTTACATTATAGAAGATTT
GCTAATCTATGAGGTCCCATTTGTCAGTTCTTTTTTTGTTGTTAGATATT
TTCTTTATTTACATTTCAAATGCTATGAAAGTTCCCTATACCCTCCCCCG
GCCCTGCTCCCTTACCTCCTTCCANCCATTCCCGGCCCTGGAATTCCCCT
GTACTGGGGCATATAAAGCCCGCAAAAAAAAAAAAATCTCTCTTCCGCGG
GGATGGCCATCTTCTGCTACACATGCAGCTAGAGACAAGAGCTCTGGCTG
CACTGGTTATTTCATATTGCTGTTCCACCTATAGGGTTGTAGACCCCTTC
AGCTTCTTGGGCACATTCTCTTGTCTTCCATTGAGGGCCCTGTGCTTCAT
CCTACAGATGACTGTGAGCATCCACTTCTGTATTTTGCCAGGTACTGGCC
TAGCCTCCATTGAGAAAGTCTATTTCATGTTCCTTTCTTGATATCTTGTT
GCCATTTGCAATTATTGTCCGCCC
NNNTTATTNNNNNNTATTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCATT
AGTCTGAGATGGCCTGGAGCTAACAGTGTTCTCTCTACCTCAGCCTCCTG
CATGCTGGGTCACAGCAATACCTCTCCATGCTGTGCTGAGGTTTATTGAG
TTAACTGTTTGGGAGACAATGTGGGATAAGCCTTTAGAATCTAAGGGGTA
TACCTACTTTTGGTCCAATTGCTGACCTTTCAGAGATCTGACCTATGGAA
ATTAACAATACAAAACCTTATCTTTAAATATTTAATTCCCCTTTAAGCAC
TTAACACAAAAAAGAAACTAGATAAGTATCTTGACATGCCTTGCAACATT
CTCATTAAAATATTATTTGTGAACACATTAAATAGAAGCTTGAAGTAATT
TAAGTAGTCTTCAAACTCCTTTAAATGAATTATGATTTAATCATAAATGA
GATACAATGCAGACATCAGAATTTTGAGACAGACTTGGGATGAAGCTCAG
GATGGAGCACTCGTCTTTCATCTGAAAGACCCTGTGTTTGCTGCCCAGAA
TCATCAAATACAAAGCTGAATACAGGTTAATATAGTTAAATGTAGTAGAA
CTAAAGCCATAGTCTCTTGATACACAAAGAGAATTTAAATAATATGCACA
ATCCCCTACTTTTAAGTTAAATCAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_c10.g1 MSMg01no185_c10.g1 CHROMAT_FILE:
MSMg01no185_c10.g1 PHD_FILE: MSMg01no185_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:47 2005
         (334 letters)



>mm_chr16_48733664_48734397
          Length = 734

 Score =  646 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattctcattaaaatattatttgtgaacacattaaatagaagcttgaagtaatttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattctcattaaaatattatttgtgaacacattaaatagaagcttgaagtaatttaagt 260

                                                                       
Query: 61  agtcttcaaactcctttaaatgaattatgatttaatcataaatgagatacaatgcagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcttcaaactcctttaaatgaattatgatttaatcataaatgagatacaatgcagaca 320

                                                                       
Query: 121 tcagaattttgagacagacttgggatgaagctcaggatggagcactcgtctttcatctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaattttgagacagacttgggatgaagctcaggatggagcactcgtctttcatctga 380

                                                                       
Query: 181 aagaccctgtgtttgctgcccagaatcatcaaatacaaagctgaatacaggttaatatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaccctgtgtttgctgcccagaatcatcaaatacaaagctgaatacaggttaatatag 440

                                                                       
Query: 241 ttaaatgtagtagaactaaagccatagtctcttgatacacaaagagaatttaaataatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaatgtagtagaactaaagccatagtctcttgatacacaaagagaatttaaataatat 500

                                             
Query: 301 gcacaatcccctacttttaagttaaatcagaaaa 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacaatcccctacttttaagttaaatcagaaaa 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)