BAC Information

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BAC

Clone NameMSMg01-186D08
Chromosome16 (Build37)
Map Location 84,232,226 - 84,232,733
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572, EG621729
Downstream geneLOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186D08.T7 (MSMg01no186_d08.b1)MSMg01-186D08.TJ (MSMg01no186_d08.g1)
ACCAG377964AG377965
length730740
length of high quality
(start - end)
320 (46 - 365)509 (77 - 585)
definitionCHROMAT_FILE: MSMg01no186_d08.b1 PHD_FILE: MSMg01no186_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:08 2005CHROMAT_FILE: MSMg01no186_d08.g1 PHD_FILE: MSMg01no186_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCTGAGAACCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAATAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCTTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCTTTTCCTCTG
AAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAATATGTTTTAACTCGCCCCCCCACCCACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTACCCCACCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGAATACAGAAAATATGGTACATTTACACAA
TGAAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGGATGGACCTTCAGGGCATCATCCTGAGTGAGTTAACTCAATCACA
AAAGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTATAATACCCAAGATACAAGATACAATTTTGCTAAACGCACGAAACT
GAAGAACGAAGACCAAAGTTGTGGACACTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAAGCTATGTAGAG
AGACTTGAATACAGAGTGAGATCATATTTATTTGGGGCTAACTGGGCAGA
TAAAGGAGCATTAATTTGTTTAAAAGGAATATTTAGAAGTATTTGGAGAT
CAAGATGTGCCCACCTCTGTAATAAAGGCTTGACATTTTAGGGAATAACC
AATGGCTTCTGGATAGATTCAACATCCTCAACGTGAGCAAAGAGAAACCA
GTGTCTGGCACGTAACCTGACTAACATTTCAGGAACGGTGAGGTAGTACA
ATCCTAACAGGATGTTTTCTGATGGCTAACTAAACTGATACAGCAGCCAG
CAAACTGCTTTTTTAACCCCCCTGTGTTAATTAAAACAATAAACTCTGGG
GGCTCAGTAGTTAAGAGCACCAAATGATCTTCCAGAAGTCCTGGGTTCAA
TTCCCAGCAACCACATGGTGGCTCACAACCATTTGTAATGGGATCTGATG
CCCTCCTCTGCTGTATGTCTGAAGACAGCTACAGTGTCCTCATATAAAGA
AAATAATTCTTTTTAAAAAATAAACTCCCACTGAGAGAAGCTTGGCCCCG
AAGAGTTCCCTCAGCTTCCGCCCTGGTGTATAGAAAAGACTACCTCTGTG
GAGAAAAGCACGCTTTTACCTACAACTTATTTTCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_d08.g1 MSMg01no186_d08.g1 CHROMAT_FILE:
MSMg01no186_d08.g1 PHD_FILE: MSMg01no186_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:08 2005
         (509 letters)



>mm_chr16_84232026_84232934
          Length = 909

 Score =  891 bits (461), Expect = 0.0
 Identities = 497/511 (97%), Gaps = 5/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaagctatgtagagagacttgaatacagagtgagatcatatttatttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaagctatgtagagagacttgaatacagagtgagatcatatttatttggg 260

                                                                       
Query: 61  gctaactgggcagataaaggagcattaatttgtttaaaaggaatatttagaagtatttgg 120
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gctaactgagcagataaaggagcattaatttggttaaaaggaatatttagaagtatttgg 320

                                                                       
Query: 121 agatcaagatgtgcccacctctgtaataaaggcttgacattttagggaataaccaatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcaagatgtgcccacctctgtaataaaggcttgacattttagggaataaccaatggc 380

                                                                       
Query: 181 ttctggatagattcaacatcctcaacgtgagcaaagagaaaccagtgtctggcacgtaac 240
           ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttctgaatggattcaacatcctcaacgtgagcaaagagaaaccagtgtctggtacgtaac 440

                                                                       
Query: 241 ctgactaacatttcaggaacggtgaggtagtacaatcctaacaggatgttttctgatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ctgactaacatttcaggaacggtgaggtagtacaatcctaacaggatgttttctgatggt 500

                                                                       
Query: 301 taactaaactgatacagcagccagcaaactgcttttttaa--cccccctgtgttaattaa 358
           ||||||||||||||||||||||||||||||||||||||||  |||   ||||||||||||
Sbjct: 501 taactaaactgatacagcagccagcaaactgcttttttaattccc---tgtgttaattaa 557

                                                                       
Query: 359 aacaataaactctgggggctcagtagttaagagcaccaaatgatcttccagaagtcctgg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacaataaactctgggggctcagtagttaagagcaccaaatgatcttccagaagtcctgg 617

                                                                       
Query: 419 gttcaattcccagcaaccacatggtggctcacaaccatttgtaatgggatctgatgccct 478
           |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct: 618 gttcaattcccagcaaccacatggtggctcgcaaccatctgtaatgggatctgatgtcct 677

                                          
Query: 479 cctctgctgtatgtctgaagacagctacagt 509
           |||||||||||||||||||||||||||||||
Sbjct: 678 cctctgctgtatgtctgaagacagctacagt 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)